Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015965.1 Corchorus capsularis cultivar CVL-1 contig15986, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26331

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
217--305
32
2.8
32
87
5
126
43
3
13
39
1.61
967--1007
3
14.0
3
94
5
75
34
0
0
65
0.93
970--1007
20
1.9
20
100
0
76
34
0
0
65
0.93
2268--2420
73
2.1
70
78
12
164
48
0
11
39
1.45
2285--2446
73
2.3
70
80
10
186
51
1
11
35
1.45
2402--2767
39
10.1
37
66
19
200
53
1
9
36
1.40
2329--2767
109
4.0
109
98
1
835
52
1
9
36
1.41
6445--6480
2
18.0
2
100
0
72
50
0
0
50
1.00
6648--6706
21
2.8
21
77
10
57
27
15
6
50
1.68
6599--7234
22
29.4
22
70
11
282
35
15
10
39
1.81
6730--6816
46
1.9
45
83
6
113
37
16
11
34
1.84
6912--6991
23
3.5
23
82
1
90
40
12
6
41
1.68
6868--6991
45
2.8
46
84
6
148
38
13
8
39
1.75
6890--7096
104
2.0
106
81
5
251
34
15
8
41
1.78
7126--7164
20
2.0
20
100
0
78
25
23
10
41
1.86
7239--7405
88
1.9
88
81
4
203
33
14
9
42
1.78
7264--7871
22
27.7
22
66
13
166
35
16
9
38
1.82
8203--8251
15
3.5
15
68
21
52
57
0
8
34
1.29
8702--8726
2
12.5
2
100
0
50
52
0
0
48
1.00
10047--10078
12
2.7
12
90
0
55
56
9
18
15
1.66
10390--10419
15
2.0
15
100
0
60
20
20
26
33
1.97
14428--14466
15
2.5
16
87
4
53
53
12
7
25
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17851--17887
18
2.1
18
100
0
74
56
21
0
21
1.42
18150--18180
2
15.5
2
100
0
62
48
0
0
51
1.00

Tables:   1

The End!