Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015967.1 Corchorus capsularis cultivar CVL-1 contig15988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8686
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31


Found at i:1948 original size:185 final size:184

Alignment explanation


    Indices: 1596--1976  Score: 462
    Period size: 185  Copynumber: 2.1  Consensus size: 184

       1586 GTTTTGTAAT

                   *                       *                               * 
       1596 TTCTTGTAATTTTCGGCCTAATTGATTCAATTAGCCAAAAATCAGTAGGTAAACCCTCCAAAATT
          1 TTCTTGTGA-TTTCGGCCTAATTGATTCAATAAGCCAAAAATCAGTAGGTAAACCCTCCAAAACT

                          *       *  *     *      *                *         
       1661 AGGTCATATCACATGAACATAATCCGAATTTGATGACATCAAGCAAACCCTAATAGGCCGAACCC
         65 AGGTCATATCACATAAACATAAGCCCAATTTAATGACACCAAGCAAACCCTAATAAGCCGAACCC

                   *            * *                                
       1726 CTTTTTGCAAAAATTGAAACTTGGGCGGCAAATTAGCTAGCTTGAAAAATTAGGG
        130 CTTTTTGAAAAAATTGAAACATAGGCGGCAAATTAGCTAGCTTGAAAAATTAGGG

                              *                 *                      **    
       1781 TTCTTGTGATTTCGGCCTGATTGATT-AATCAAGCCCAAAATCAGTAGGTTAAACCCT-TTAAAC
          1 TTCTTGTGATTTCGGCCTAATTGATTCAAT-AAGCCAAAAATCAGTAGG-TAAACCCTCCAAAAC

                 *            *                                             *
       1844 TAGGTTATATCACATAAATATAAGCCCAATTTAATGA-ACCAAGCTAAACCCCTAATAAGCCGAG
         64 TAGGTCATATCACATAAACATAAGCCCAATTTAATGACACCAAGC-AAA-CCCTAATAAGCCGAA

               *               *                     *     ***        
       1908 CCCTTTTTTGAAAAAATTGCAACATAGGCGGCAAATTAGCTTGCTTGGTGAATTAGGG
        127 CCCCTTTTTGAAAAAATTGAAACATAGGCGGCAAATTAGCTAGCTTGAAAAATTAGGG

              *        
       1966 TTTTTGTGATT
          1 TTCTTGTGATT

       1977 AAGGCAAAAT


Statistics
Matches: 166,  Mismatches: 26, Indels: 8
        0.83            0.13        0.04

Matches are distributed among these distances:
 183    9  0.05
 184   69  0.42
 185   88  0.53

ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Consensus pattern (184 bp):   
TTCTTGTGATTTCGGCCTAATTGATTCAATAAGCCAAAAATCAGTAGGTAAACCCTCCAAAACTA
GGTCATATCACATAAACATAAGCCCAATTTAATGACACCAAGCAAACCCTAATAAGCCGAACCCC
TTTTTGAAAAAATTGAAACATAGGCGGCAAATTAGCTAGCTTGAAAAATTAGGG

Done.