genome.fa.s15968.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015968.1 Corchorus capsularis cultivar CVL-1 contig15989, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39641

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4590--4651	31	2.0	31	87	6	90	32	20	1	45	1.61
9153--9604	226	2.0	226	96	0	823	36	14	18	30	1.91
12533--12557	10	2.5	10	100	0	50	64	8	0	28	1.22
13248--13281	5	6.6	5	86	6	50	82	0	17	0	0.67
13243--13285	16	2.6	16	85	14	61	79	0	20	0	0.74
14033--14095	22	2.9	22	81	6	58	26	12	7	52	1.67
14053--14578	22	24.4	22	68	15	194	36	16	9	37	1.81
14260--14344	23	3.7	23	85	1	100	38	15	9	36	1.80
14260--14366	45	2.4	45	78	9	110	37	14	9	39	1.78
14616--14686	22	3.2	23	76	9	67	33	18	8	39	1.81
14847--14964	22	5.4	22	71	12	73	36	17	9	36	1.82
15000--15086	22	3.9	22	75	8	68	41	19	8	31	1.80
15007--15151	44	3.2	44	84	7	125	39	17	9	33	1.82
15054--15185	22	6.0	22	78	11	137	38	16	9	34	1.82
15052--15182	44	3.0	43	87	5	174	37	16	9	35	1.82
15055--15185	66	2.0	66	83	5	167	38	16	9	35	1.81
15349--15386	19	2.0	20	85	15	53	63	2	5	28	1.30
15827--15885	28	2.1	28	93	0	100	10	13	38	37	1.79
20807--21532	360	2.0	357	97	1	1373	30	18	23	28	1.97
25070--25149	13	5.6	13	76	16	70	40	8	6	45	1.60
25099--25135	18	2.1	18	89	0	56	48	2	5	43	1.40
25448--25485	6	6.5	6	85	14	53	86	0	13	0	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25448--25485	9	4.3	9	83	3	51	86	0	13	0	0.56
25448--25485	18	2.1	18	95	0	67	86	0	13	0	0.56
25738--25802	27	2.4	27	85	9	89	32	10	23	33	1.89
25824--25862	15	2.4	16	87	8	53	76	0	20	2	0.90
25825--25878	19	3.1	16	75	17	54	79	1	16	1	0.91
27054--27213	38	4.3	38	76	9	154	31	20	16	30	1.95
27292--27339	19	2.5	19	96	0	87	33	31	4	31	1.77
27330--27432	41	2.4	43	87	3	138	31	24	14	30	1.95
27441--27577	50	2.8	48	81	11	161	24	18	24	32	1.97
27985--28043	28	2.1	28	90	0	91	13	11	35	38	1.82
29688--29766	29	2.7	29	81	11	83	20	13	20	45	1.85
34299--34341	21	2.0	21	86	9	59	37	11	30	20	1.89
36762--36905	44	3.2	44	89	4	216	31	6	22	38	1.81
37241--37299	31	1.9	31	85	0	82	66	0	18	15	1.26
37613--37655	5	8.6	5	80	19	54	81	0	18	0	0.69
37601--37656	20	2.8	19	84	10	60	80	0	17	1	0.80
37601--37656	25	2.2	25	82	14	71	80	0	17	1	0.80
38835--38942	35	3.0	36	77	5	121	17	14	27	39	1.89
38823--38919	35	2.7	35	75	6	106	14	17	26	41	1.88
38943--39017	35	2.1	35	90	0	114	16	21	24	38	1.92
38871--39058	84	2.2	84	93	0	313	17	20	24	37	1.93
39006--39339	71	4.7	71	86	3	469	22	18	21	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39006--39340	141	2.4	141	91	2	539	22	18	21	37	1.94
39288--39388	49	2.1	49	86	3	141	19	19	25	34	1.96
39218--39459	119	2.0	119	91	0	394	21	19	23	36	1.95

Tables:   1

The End!