Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015972.1 Corchorus capsularis cultivar CVL-1 contig15993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54865

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
875--931
31
1.9
31
89
7
91
43
10
28
17
1.82
11267--11505
88
2.7
88
98
0
451
31
28
5
34
1.80
14052--14413
132
2.8
128
91
6
577
43
14
11
31
1.80
20616--20757
70
2.0
71
90
1
223
36
12
14
35
1.85
21176--21307
26
4.9
26
77
6
138
20
21
3
54
1.60
21189--21341
55
2.7
55
81
10
161
18
20
3
58
1.53
21356--21491
27
5.2
27
77
19
105
18
23
2
55
1.56
21397--21438
11
4.0
11
93
6
70
16
26
0
57
1.40
21399--21466
11
5.8
11
80
17
66
14
23
1
60
1.43
21219--21491
102
2.6
101
73
8
237
17
23
2
55
1.55
21355--21472
27
4.6
27
77
16
117
18
23
3
54
1.59
21376--21524
38
3.9
37
72
17
110
16
24
2
55
1.54
21270--21505
76
3.1
70
76
13
202
16
24
2
56
1.51
21464--21773
166
1.9
167
91
3
509
21
19
5
53
1.64
21699--21977
22
12.9
22
70
14
116
24
20
3
51
1.63
21714--21948
64
3.7
64
73
12
162
24
21
3
50
1.65
21735--22013
107
2.7
106
79
11
292
23
20
3
52
1.63
21956--21991
15
2.5
15
90
4
56
22
13
5
58
1.56
21973--22042
19
3.5
20
86
7
99
21
22
5
50
1.70
21758--22524
20
40.5
20
68
22
267
21
22
6
49
1.72
21992--22524
55
9.8
55
68
14
243
20
23
7
48
1.74
22186--22280
34
2.7
35
80
8
104
22
25
6
46
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22270--22521
35
7.1
35
71
16
166
20
22
7
49
1.73
22356--22385
15
2.0
15
93
0
51
23
33
6
36
1.81
22273--22434
69
2.4
68
80
5
173
20
22
9
47
1.78
22063--22493
158
2.8
152
88
8
667
20
23
7
47
1.76
22303--22521
89
2.4
89
74
10
230
21
22
6
49
1.73
23857--23898
19
2.4
17
88
11
59
50
14
30
4
1.63
23864--23902
19
2.1
19
100
0
78
43
20
30
5
1.73
26756--27290
50
10.7
50
86
4
649
24
29
11
34
1.91
26756--27290
149
3.6
150
83
5
665
24
29
11
34
1.91
26756--27290
199
2.7
198
86
3
718
24
29
11
34
1.91
27388--27531
40
3.6
40
81
9
125
30
22
8
38
1.83
27437--27598
41
4.0
41
82
8
163
32
22
6
38
1.80
29014--29137
44
2.8
43
78
10
126
34
16
21
26
1.95
30674--30716
19
2.4
17
85
11
59
18
25
4
51
1.66
30830--30901
35
2.1
35
97
0
135
15
16
31
36
1.90
30912--30943
2
16.0
2
100
0
64
50
0
0
50
1.00
30941--30965
4
6.2
4
100
0
50
24
0
0
76
0.80
48930--48954
5
5.0
5
100
0
50
80
20
0
0
0.72
53852--53893
21
2.0
21
86
9
59
30
19
2
47
1.62

Tables:   1

The End!