genome.fa.s15974.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015974.1 Corchorus capsularis cultivar CVL-1 contig15995, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135083

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219--252	2	17.0	2	100	0	68	50	0	0	50	1.00
3780--3819	21	1.9	21	89	0	62	35	27	12	25	1.92
5220--5252	2	17.5	2	87	12	52	45	0	0	54	0.99
8897--8955	15	3.9	15	79	0	64	11	33	22	32	1.90
10181--10263	18	4.6	18	83	0	85	10	20	42	26	1.85
13183--13581	220	1.8	222	88	2	624	33	16	20	29	1.95
14463--15405	477	2.0	462	90	3	1483	25	14	17	41	1.88
19176--19214	19	2.1	18	85	4	51	25	5	0	69	1.09
20975--21062	43	2.1	42	86	2	122	39	4	18	37	1.71
21120--21496	37	10.2	37	77	4	384	45	16	14	23	1.84
21117--21496	74	5.1	74	90	0	580	45	16	14	23	1.84
21940--21995	24	2.3	23	84	6	67	46	16	17	19	1.84
21964--22390	37	11.5	37	80	6	472	44	16	17	21	1.86
21964--22392	74	5.8	74	86	3	594	45	16	17	20	1.86
25773--25797	13	1.9	13	100	0	50	48	0	12	40	1.40
27212--27247	15	2.3	16	90	4	56	52	19	8	19	1.70
36501--36908	156	2.6	157	81	6	461	31	13	20	33	1.92
38780--38854	31	2.4	31	84	0	105	36	22	9	32	1.86
41989--42089	33	3.1	33	84	2	114	23	31	11	32	1.91
42004--42115	33	3.4	33	81	4	100	22	31	9	36	1.87
42717--42744	13	2.2	13	100	0	56	32	7	14	46	1.71
54785--54826	22	1.9	22	90	0	66	50	9	14	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56578--56742	60	2.8	60	84	1	215	36	18	16	28	1.93
56575--56742	31	5.6	30	68	14	105	35	18	17	28	1.93
56775--56969	31	6.4	31	71	13	138	27	17	17	36	1.93
56807--56965	60	2.7	60	92	3	250	28	18	17	35	1.94
70779--70808	1	30.0	1	100	0	60	0	0	0	100	0.00
72481--72538	19	2.9	20	87	5	82	31	20	6	41	1.79
74868--75008	30	4.5	31	65	23	89	40	7	18	34	1.78
74852--75046	97	2.0	97	98	0	381	40	8	17	33	1.80
74889--75027	30	4.4	31	66	22	92	38	7	17	35	1.78
75612--75670	24	2.5	24	88	0	91	25	10	33	30	1.89
76252--76334	41	2.0	41	100	0	166	24	22	21	31	1.98
77298--77344	23	2.0	23	100	0	94	31	21	17	29	1.96
79127--79162	2	18.0	2	100	0	72	50	0	0	50	1.00
85601--85646	24	1.9	24	95	0	83	19	19	10	50	1.77
87188--87321	36	3.7	36	92	0	214	28	16	10	44	1.80
90364--91671	654	2.0	657	92	1	2182	39	16	14	30	1.88
91718--91822	54	1.9	54	94	0	183	35	24	14	25	1.93
94416--94465	26	2.0	25	88	11	75	68	10	4	18	1.34
101403--101436	17	2.0	17	100	0	68	41	11	29	17	1.85
102041--102076	7	5.1	7	93	0	63	13	58	0	27	1.36
103488--103515	13	2.2	13	100	0	56	32	7	0	60	1.24
103534--103579	3	15.3	3	100	0	92	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113812--113840	2	14.5	2	100	0	58	51	0	0	48	1.00
115107--115146	14	3.1	14	75	20	50	37	0	0	62	0.95
116717--116763	25	1.9	25	86	4	69	51	19	12	17	1.77
119610--119659	23	2.1	24	82	10	59	16	10	22	52	1.73
123047--123091	20	2.2	20	84	4	54	66	8	6	17	1.40
128893--129185	142	2.0	144	92	3	493	32	18	18	30	1.95
130245--130275	12	2.6	12	89	0	53	90	0	9	0	0.46
135016--135068	25	2.2	25	96	3	99	58	0	3	37	1.16

Tables:   1

The End!