Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015976.1 Corchorus capsularis cultivar CVL-1 contig15997, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37089

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326--1298
431
2.2
430
82
8
1161
31
14
13
41
1.84
2768--2799
15
2.1
15
100
0
64
31
0
18
50
1.48
2863--3102
120
2.0
120
93
0
408
18
15
16
50
1.79
3568--3612
23
2.0
22
91
8
74
51
0
13
35
1.41
3683--4583
445
2.1
428
81
8
994
43
12
14
28
1.83
6450--6515
32
2.2
31
86
8
91
39
25
6
28
1.80
10426--10459
17
1.9
18
94
5
61
58
8
11
20
1.59
10759--10896
68
2.0
68
100
0
276
18
19
20
41
1.91
12477--12540
27
2.4
27
89
5
105
26
10
9
53
1.66
13775--13861
29
3.0
29
84
6
113
21
21
12
43
1.86
14197--14271
29
2.5
30
79
10
91
44
10
18
26
1.83
15759--15788
15
2.1
14
93
6
51
33
0
0
66
0.92
19195--19283
45
2.0
44
88
2
133
25
21
17
34
1.96
20206--20613
167
2.5
166
86
3
554
40
16
14
28
1.88
21015--21039
13
1.9
13
100
0
50
16
28
8
48
1.74
22044--22077
17
2.0
17
100
0
68
52
0
29
17
1.45
27299--27398
36
2.8
36
93
0
173
28
20
18
34
1.95
29562--29601
19
2.1
19
90
0
62
32
15
25
27
1.95
30221--30272
17
3.1
17
77
2
52
19
19
38
23
1.93
36340--36366
14
1.9
14
100
0
54
25
7
14
51
1.68

Tables:   1

The End!