Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015977.1 Corchorus capsularis cultivar CVL-1 contig15998, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10529
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:5684 original size:16 final size:16

Alignment explanation


    Indices: 5663--5697  Score: 70
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       5653 ACAATTCAGA

                            
       5663 AAGCAGAAAAGCTCTG
          1 AAGCAGAAAAGCTCTG

                            
       5679 AAGCAGAAAAGCTCTG
          1 AAGCAGAAAAGCTCTG

               
       5695 AAG
          1 AAG

       5698 TATTTCAGAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11


Consensus pattern (16 bp):   
AAGCAGAAAAGCTCTG

Found at i:10363 original size:21 final size:21

Alignment explanation


    Indices: 10337--10382  Score: 83
    Period size: 21  Copynumber: 2.2  Consensus size: 21

      10327 CTATGTTATT

                       *         
      10337 TTAGATCACATTGATCATTCA
          1 TTAGATCACATAGATCATTCA

                                 
      10358 TTAGATCACATAGATCATTCA
          1 TTAGATCACATAGATCATTCA

                
      10379 TTAG
          1 TTAG

      10383 TTTGGTAGAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  21   24  1.00

ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37


Consensus pattern (21 bp):   
TTAGATCACATAGATCATTCA
Done.