Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015981.1 Corchorus capsularis cultivar CVL-1 contig16002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25341

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44--122
38
2.1
38
88
2
115
15
16
11
56
1.66
1494--1547
22
2.5
22
75
6
56
38
9
14
37
1.79
1535--1597
22
2.9
22
87
0
90
30
14
17
38
1.89
1687--2078
22
17.6
22
70
15
132
39
9
15
35
1.80
1885--1948
21
2.8
22
81
11
67
48
7
7
35
1.61
1911--2097
44
4.3
44
73
13
147
41
9
12
36
1.75
2184--2231
19
2.5
20
93
3
80
45
10
18
25
1.81
2271--2324
22
2.5
22
87
6
74
42
7
11
38
1.68
2948--3110
55
3.0
55
88
1
220
31
18
28
20
1.96
3302--3341
21
1.9
21
94
0
71
25
15
27
32
1.95
3883--4174
156
1.9
155
79
11
328
36
17
15
30
1.90
9469--9496
2
14.0
2
100
0
56
50
0
0
50
1.00
12090--12128
2
20.0
2
89
5
62
46
0
2
51
1.14
14795--14824
2
15.0
2
100
0
60
50
0
0
50
1.00
16922--16984
30
2.1
30
100
0
126
63
20
3
12
1.42
21488--21522
12
3.2
11
92
8
54
45
2
0
51
1.16
22040--22076
3
12.3
3
94
0
65
64
0
32
2
1.07
22487--22646
79
2.0
79
91
0
257
30
30
13
25
1.94
23330--23700
85
4.4
84
85
5
480
22
34
16
26
1.95
23330--23700
127
2.9
125
88
4
530
22
34
16
26
1.95
23330--23697
42
8.7
42
87
3
506
22
34
16
26
1.95

Tables:   1

The End!