Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015987.1 Corchorus capsularis cultivar CVL-1 contig16008, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38473

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2800--2860
17
3.4
17
71
20
61
57
11
24
6
1.57
2786--2860
37
2.0
37
97
0
141
54
12
24
9
1.66
2799--2863
19
3.5
19
69
12
62
58
10
24
6
1.54
2928--2966
15
2.6
15
84
8
53
43
10
12
33
1.77
3579--3622
22
2.0
22
86
0
61
52
9
9
29
1.64
3683--3745
15
4.4
14
80
13
74
77
1
20
0
0.85
3684--3729
22
2.1
22
91
0
74
82
0
17
0
0.67
3693--3745
18
2.6
20
77
20
56
77
1
20
0
0.87
5108--5653
35
15.6
35
70
7
333
18
17
26
37
1.93
5108--5505
71
5.6
71
85
3
527
19
17
26
36
1.94
5095--5505
141
2.9
140
90
3
610
19
17
25
36
1.94
5416--5653
100
2.3
102
82
6
266
18
16
27
37
1.92
8768--9232
35
13.8
34
77
13
387
38
9
19
31
1.85
8737--9233
70
7.4
68
79
10
433
38
10
19
31
1.85
8720--9230
167
3.0
165
82
7
539
38
10
19
31
1.85
8769--9230
105
4.5
106
80
8
448
38
9
19
32
1.85
9218--9244
14
1.9
14
100
0
54
40
0
29
29
1.57
11985--12396
72
5.7
72
90
2
598
30
20
27
21
1.98
12759--12882
35
3.5
35
83
2
151
26
13
33
26
1.94
16744--16858
42
2.8
41
80
9
128
19
12
27
40
1.87
17560--17604
16
2.8
17
76
10
58
11
11
40
37
1.76
17752--17841
32
2.8
32
91
3
137
10
11
26
52
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17783--17842
16
3.8
16
77
0
57
8
11
26
53
1.65
34509--34569
30
2.0
30
87
0
86
32
11
29
26
1.91

Tables:   1

The End!