genome.fa.s15988.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015988.1 Corchorus capsularis cultivar CVL-1 contig16009, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64887

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2003--2079	29	2.6	29	87	4	100	27	24	14	33	1.94
2776--2832	28	2.0	28	96	0	105	40	15	21	22	1.91
6738--6802	33	1.9	34	93	3	114	33	12	6	47	1.66
6778--6817	22	2.0	21	85	14	57	55	5	10	30	1.54
14428--14500	36	2.0	36	86	5	103	20	19	9	50	1.75
24709--24752	22	2.0	22	86	0	61	43	9	2	45	1.48
24879--25305	22	19.5	22	69	15	131	36	15	10	37	1.82
25058--25136	23	3.5	23	82	5	90	37	12	10	39	1.77
24854--25764	44	21.2	44	68	15	277	35	16	9	38	1.82
25293--25343	19	2.6	20	90	6	86	25	17	11	45	1.83
25449--25764	22	14.3	22	69	11	162	34	15	9	40	1.81
25790--25831	22	1.9	22	85	9	59	30	16	9	42	1.80
25720--25842	56	2.2	56	81	5	142	33	17	8	40	1.80
25864--26022	22	7.1	22	75	7	99	38	17	10	33	1.83
25919--25993	22	3.4	22	88	3	107	34	17	13	34	1.89
26191--26228	19	2.0	20	85	15	53	63	2	5	28	1.30
26540--26598	31	1.9	31	93	6	102	47	5	20	27	1.71
27483--27642	55	3.0	55	88	4	220	33	18	26	21	1.97
27860--27899	21	1.9	21	100	0	80	20	15	30	35	1.93
28048--28080	17	1.9	17	93	0	57	27	9	36	27	1.87
28426--28781	156	2.3	155	78	8	366	35	18	15	30	1.92
42713--42801	34	2.5	35	85	3	108	20	24	5	49	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42857--42931	36	2.1	35	92	2	123	18	21	4	56	1.58
42889--43019	55	2.4	55	98	1	255	16	24	6	51	1.69
43036--43225	22	8.8	22	79	10	178	20	17	5	56	1.61
43044--43130	7	11.7	7	68	15	50	17	17	4	60	1.51
46456--46495	20	2.0	20	100	0	80	25	10	10	55	1.64
46629--46657	15	1.9	15	100	0	58	51	6	13	27	1.66
52424--52459	19	1.9	18	88	5	54	41	2	25	30	1.69
61595--61757	55	3.0	55	88	1	220	33	17	25	22	1.96
63558--63608	26	2.0	26	88	7	77	25	19	3	50	1.64
63992--64056	22	3.1	22	86	6	82	23	21	6	49	1.72

Tables:   1

The End!