genome.fa.s15989.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015989.1 Corchorus capsularis cultivar CVL-1 contig16010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61409

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628--848	110	2.0	110	99	0	433	35	9	21	34	1.85
3219--3254	17	2.1	17	89	5	54	66	8	13	11	1.44
4343--4434	4	23.2	4	77	14	93	0	25	0	75	0.81
4325--4436	24	4.7	24	80	7	90	0	24	0	75	0.87
4333--4386	6	9.2	6	85	2	74	0	20	0	79	0.73
5142--5174	2	16.5	2	100	0	66	51	0	0	48	1.00
8879--9135	36	7.2	36	70	14	167	26	18	9	45	1.79
8848--9076	73	3.1	73	95	0	413	23	17	9	50	1.74
8851--9040	37	5.2	37	64	16	117	23	15	9	52	1.71
8863--9136	73	3.8	74	88	6	210	26	18	9	45	1.79
8850--9134	146	2.0	141	83	7	360	25	17	9	47	1.78
9082--9153	32	2.2	32	100	0	144	31	23	8	36	1.85
9128--9315	37	5.2	37	82	7	244	26	25	7	41	1.81
9096--9315	69	3.1	70	80	14	256	26	25	7	40	1.82
9417--9625	41	5.1	41	93	4	343	23	21	10	44	1.82
9417--9625	81	2.6	81	93	3	348	23	21	10	44	1.82
9640--9809	37	4.6	37	87	0	196	25	19	11	44	1.83
9628--10314	74	9.0	74	72	11	271	25	18	10	45	1.81
9789--9827	18	2.2	18	86	9	53	35	17	7	38	1.79
9807--10336	37	14.2	37	83	4	559	26	17	10	46	1.79
9752--9864	55	2.1	55	88	3	165	30	22	7	40	1.80
9715--9901	92	2.0	92	86	4	261	27	20	9	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9678--9939	129	2.0	130	85	3	359	27	19	9	43	1.82
9807--10336	188	2.8	185	82	6	615	26	17	10	46	1.79
9807--10314	225	2.3	222	85	5	668	26	17	10	45	1.80
15995--16027	2	16.5	2	100	0	66	51	0	0	48	1.00
24746--24981	78	3.0	78	99	0	463	44	16	5	33	1.72
33926--33956	14	2.3	13	94	5	53	35	22	16	25	1.94
35770--35807	19	2.1	18	90	5	58	47	2	21	28	1.64
35750--35819	29	2.4	30	80	7	81	44	4	17	34	1.68
38535--38574	21	1.9	21	84	0	53	45	22	20	12	1.84
40030--40077	25	1.9	25	82	0	60	27	43	12	16	1.84
40163--40194	16	2.0	16	93	0	55	18	6	21	53	1.67
40337--40479	70	2.0	70	100	0	286	27	20	9	41	1.83
41978--42015	19	2.1	18	90	5	58	47	2	21	28	1.64
41967--42027	30	2.0	30	84	6	79	45	3	18	32	1.65
47727--47809	37	2.2	37	97	0	157	21	13	21	43	1.87
51093--51180	22	4.2	22	77	8	94	62	2	21	13	1.42
51203--51243	22	1.9	21	90	5	64	56	2	26	14	1.51
51064--51697	36	17.3	37	68	20	284	56	3	23	16	1.55
51391--51468	15	4.9	16	73	10	61	52	2	26	17	1.58
51390--51696	32	8.9	32	71	15	125	55	3	24	16	1.57
51505--51554	22	2.4	21	83	6	66	58	2	24	16	1.49
51527--51584	14	3.9	14	75	18	55	60	0	25	13	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51502--51693	69	2.8	68	83	9	207	58	3	22	15	1.52
51600--51691	38	2.4	37	83	7	105	59	4	20	15	1.52
51647--51697	15	3.4	15	76	10	59	60	1	19	17	1.45
51648--51705	30	2.0	30	86	3	82	60	3	20	15	1.49
51709--51766	15	3.7	15	74	19	55	55	1	29	13	1.49
55830--55883	15	3.7	15	78	9	58	77	1	3	16	1.00
58323--58415	22	4.2	22	74	17	70	21	17	6	54	1.64
58679--58740	16	3.8	16	78	14	63	25	17	8	48	1.75
58712--58752	15	2.7	16	82	17	52	24	17	9	48	1.76
58685--58821	71	1.9	72	87	1	204	27	18	7	45	1.76
58771--59138	55	6.7	54	92	2	574	25	19	8	47	1.76
59995--60130	49	2.8	49	82	5	152	34	19	7	38	1.80
60896--60939	16	2.8	16	85	0	70	38	25	9	27	1.86

Tables:   1

The End!