Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001599.1 Corchorus capsularis cultivar CVL-1 contig01599, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 700

Length: 1168
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:491 original size:18 final size:18

Alignment explanation


    Indices: 464--500  Score: 65
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        454 TTAAACATTT

                 *            
        464 TCTTATTGATGATGATGA
          1 TCTTACTGATGATGATGA

                              
        482 TCTTACTGATGATGATGA
          1 TCTTACTGATGATGATGA

             
        500 T
          1 T

        501 ATCGATTTTG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43


Consensus pattern (18 bp):   
TCTTACTGATGATGATGA

Found at i:578 original size:18 final size:18

Alignment explanation


    Indices: 557--619  Score: 90
    Period size: 18  Copynumber: 3.5  Consensus size: 18

        547 TAGAATTTTA

                     *    *   
        557 TGACGATATGGATGCTAG
          1 TGACGATATTGATGATAG

                 *            
        575 TGACGTTATTGATGATAG
          1 TGACGATATTGATGATAG

                 *            
        593 TGACGCTATTGATGATAG
          1 TGACGATATTGATGATAG

                     
        611 TGACGATAT
          1 TGACGATAT

        620 CGATCGTGAC


Statistics
Matches: 40,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   40  1.00

ACGTcount: A:0.29, C:0.10, G:0.29, T:0.33


Consensus pattern (18 bp):   
TGACGATATTGATGATAG
Done.