Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015990.1 Corchorus capsularis cultivar CVL-1 contig16011, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12360

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
223--250
14
2.0
14
100
0
56
50
14
14
21
1.78
841--907
11
5.7
11
81
11
71
5
11
0
82
0.84
847--907
12
5.1
12
82
5
61
6
9
0
83
0.80
846--885
20
2.0
21
95
5
73
0
15
0
85
0.61
847--907
23
2.5
24
84
5
79
6
9
0
83
0.80
1100--1452
69
5.2
68
85
5
414
29
17
27
25
1.97
1122--1452
135
2.4
136
86
3
436
29
16
28
25
1.97
1955--2033
41
1.9
41
89
0
122
34
17
15
32
1.91
2308--2351
21
2.2
19
88
8
61
2
18
0
79
0.83
2308--2358
12
4.8
11
81
13
54
1
19
0
78
0.85
3670--3736
6
11.5
6
74
15
52
7
16
0
76
1.01
3668--3730
23
2.7
23
81
16
76
7
17
0
74
1.05
3663--3742
29
2.8
28
82
12
85
7
17
0
75
1.03
4141--4367
75
3.0
75
86
0
319
31
21
9
37
1.85
10473--10919
64
7.2
61
70
18
214
21
20
4
53
1.62
10492--10854
22
16.7
21
74
14
226
20
20
4
54
1.61
10493--10921
44
9.9
43
71
16
246
20
20
4
54
1.61
10507--10708
86
2.3
84
84
9
239
21
19
5
53
1.65
10659--10824
36
4.5
36
71
12
104
19
22
1
56
1.52
10770--10847
7
10.7
7
72
13
50
19
20
1
58
1.46

Tables:   1

The End!