Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01015993.1 Corchorus capsularis cultivar CVL-1 contig16014, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3817
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35


Found at i:311 original size:20 final size:20

Alignment explanation


    Indices: 286--325  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        276 CGTTTTCATC

                                
        286 TATGATTTAAAGAACAAATT
          1 TATGATTTAAAGAACAAATT

                                
        306 TATGATTTAAAGAACAAATT
          1 TATGATTTAAAGAACAAATT

        326 CACATAGAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35


Consensus pattern (20 bp):   
TATGATTTAAAGAACAAATT
Done.