Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015994.1 Corchorus capsularis cultivar CVL-1 contig16015, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20225

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2635--2670
19
1.9
18
88
5
54
41
2
22
33
1.68
6875--6984
33
3.3
32
81
8
98
21
43
24
10
1.83
7999--8071
33
2.2
33
82
4
85
16
42
30
10
1.82
8135--8186
16
3.2
16
69
15
52
11
26
46
15
1.80
9041--9099
28
2.1
28
93
0
100
38
16
30
13
1.88
11823--11916
28
3.2
28
79
13
91
58
5
4
31
1.40
11823--11916
29
3.2
28
82
7
98
58
5
4
31
1.40
11934--12005
31
2.4
29
82
13
83
27
16
25
30
1.97
12313--12337
2
12.5
2
100
0
50
0
0
48
52
1.00
12698--13035
178
1.9
178
83
6
443
34
13
16
35
1.88
14765--14792
2
14.0
2
100
0
56
50
0
0
50
1.00
18482--18539
28
2.1
28
86
0
80
39
17
29
13
1.88

Tables:   1

The End!