Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015995.1 Corchorus capsularis cultivar CVL-1 contig16016, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54185

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
126--229
33
3.1
35
66
13
99
50
8
9
31
1.66
1399--1452
2
27.0
2
85
14
76
48
1
1
48
1.23
1776--1925
74
2.0
74
96
0
273
29
16
16
38
1.90
2134--2168
11
3.2
11
83
0
52
77
17
5
0
0.96
17179--17277
31
3.2
31
82
2
101
19
19
27
34
1.95
18354--18415
29
2.1
30
87
3
90
37
17
4
40
1.71
29674--29771
50
2.0
50
97
0
187
31
21
11
35
1.89
32195--32380
62
3.0
62
100
0
372
43
6
11
38
1.66
32666--32698
11
3.0
11
91
8
50
42
0
3
54
1.15
36573--36619
3
15.7
3
100
0
94
65
0
0
34
0.93
37064--37143
28
2.8
28
84
5
88
26
23
11
38
1.88
37831--37913
31
2.7
31
88
0
112
38
12
24
25
1.89
41767--41807
20
2.0
20
85
0
55
21
9
29
39
1.86
42355--42391
19
1.9
19
100
0
74
37
5
27
29
1.79
44073--44855
390
2.0
390
100
0
1566
28
10
18
42
1.84
45285--45309
13
1.9
13
100
0
50
44
8
8
40
1.63
50605--50658
27
2.0
27
92
0
90
20
16
11
51
1.74

Tables:   1

The End!