Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015997.1 Corchorus capsularis cultivar CVL-1 contig16018, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45543

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
51
0
0
48
1.00
424--563
32
4.4
32
83
1
156
37
34
11
16
1.85
643--704
22
2.8
22
80
4
81
41
8
6
43
1.60
1477--1969
246
2.0
246
97
0
941
46
11
19
22
1.82
2646--2768
54
2.3
54
94
1
210
27
27
8
35
1.87
2676--2760
28
3.1
27
65
19
68
28
27
8
36
1.85
2685--2770
28
3.1
27
65
18
70
27
27
8
36
1.85
6368--6432
32
2.0
32
100
0
130
27
21
24
26
1.99
8950--8985
19
1.9
18
88
5
54
41
2
22
33
1.68
10229--10258
13
2.2
14
94
5
53
30
6
10
53
1.60
11180--11278
50
2.0
48
88
3
144
35
35
10
19
1.85
15262--15351
44
2.0
44
100
0
180
15
13
30
41
1.85
18261--19096
417
2.0
417
99
0
1645
34
17
13
34
1.88
23062--23092
8
3.8
8
91
8
53
67
12
0
19
1.22
23063--23092
9
3.4
9
90
9
53
70
10
0
20
1.16
23732--23819
16
5.4
14
71
22
50
31
40
20
6
1.79
23732--23857
32
3.9
32
80
4
135
32
38
19
10
1.85
23734--23834
34
3.0
34
81
5
125
31
39
18
9
1.84
23746--23857
16
6.9
16
75
9
84
33
37
17
11
1.86
23853--23893
21
2.0
21
85
0
55
43
24
19
12
1.85
24680--24814
16
8.5
16
74
8
132
37
34
17
10
1.84
25496--25577
40
2.0
40
90
0
128
60
10
7
20
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25659--25694
13
2.8
13
86
0
54
19
44
8
27
1.79
25844--25879
13
2.8
13
91
0
54
30
8
36
25
1.85
27621--27730
55
2.0
56
98
1
213
33
17
9
40
1.81
28860--28981
45
2.7
45
87
7
185
23
2
27
46
1.65
33439--33498
22
2.8
22
71
16
54
43
11
6
38
1.68
33513--34049
22
24.6
22
69
12
132
36
14
9
39
1.79
33820--33882
23
2.7
23
90
4
92
41
12
6
39
1.69
34157--34212
22
2.5
22
79
0
67
33
14
8
42
1.77
34197--34335
22
6.2
22
75
9
95
33
14
10
41
1.81
34219--34326
46
2.4
45
80
9
105
32
13
11
42
1.80
34399--34504
44
2.4
44
84
7
144
36
17
8
36
1.81
34399--34506
22
4.9
22
78
8
121
36
18
8
37
1.81
34538--34675
68
2.1
66
82
5
161
40
15
7
36
1.75
34538--34677
22
6.3
22
77
6
129
40
15
7
36
1.75
34842--34879
20
1.9
19
85
15
51
63
0
5
31
1.17
36666--36733
30
2.2
32
86
7
104
47
5
16
30
1.70
36666--36739
31
2.4
31
88
4
105
47
6
17
28
1.73
40970--41053
31
2.8
31
89
3
118
28
25
13
33
1.93
40972--41071
31
3.3
29
80
8
103
27
26
13
34
1.93
43725--43754
2
15.0
2
100
0
60
50
0
0
50
1.00
44128--44211
31
2.8
31
89
7
120
32
15
25
27
1.95

Tables:   1

The End!