Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01015999.1 Corchorus capsularis cultivar CVL-1 contig16020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30048

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
136--161
2
13.0
2
100
0
52
50
0
0
50
1.00
1268--1305
19
1.9
19
89
5
58
50
7
13
28
1.69
4915--5071
79
2.0
79
85
4
212
37
9
19
33
1.84
10025--10090
31
2.2
31
83
5
82
46
15
13
24
1.81
10181--10268
5
17.2
5
70
15
56
70
3
1
25
1.10
10195--10225
9
3.3
9
91
8
53
80
0
0
19
0.71
10181--10268
19
4.3
19
76
14
70
70
3
1
25
1.10
10181--10255
33
2.3
33
84
6
91
72
4
1
22
1.10
11277--11355
31
2.7
29
76
4
77
29
12
17
40
1.87
21509--21552
12
3.6
12
81
6
61
22
20
18
38
1.93
27517--27580
30
2.1
30
82
11
76
51
3
0
45
1.17
28189--28245
13
4.7
13
75
14
59
52
5
5
36
1.47
28188--28233
23
2.0
23
100
0
92
52
8
4
34
1.52
28525--28567
21
2.1
21
91
4
70
27
20
9
41
1.83
28948--29033
40
2.2
40
86
0
118
44
18
5
31
1.74

Tables:   1

The End!