Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016000.1 Corchorus capsularis cultivar CVL-1 contig16021, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33797

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
556--580
13
1.9
13
100
0
50
56
0
0
44
0.99
684--1331
324
2.0
324
98
0
1242
39
17
15
27
1.90
1557--1641
44
1.9
44
95
0
152
32
15
25
25
1.95
2374--2398
3
8.3
3
100
0
50
0
32
0
68
0.90
9445--9484
18
2.2
18
90
0
62
0
2
12
85
0.71
11986--12021
6
6.0
6
96
0
54
38
44
0
16
1.48
12155--12206
24
2.2
24
82
0
59
34
42
3
19
1.69
23594--23745
76
2.0
76
97
0
286
35
19
14
30
1.92
25943--25983
15
2.6
16
81
18
50
63
2
2
31
1.20
30514--30547
3
11.3
3
100
0
68
67
0
0
32
0.91
30758--30790
11
3.0
11
95
0
57
45
33
0
21
1.52
30947--31028
33
2.5
33
100
0
164
12
26
42
18
1.85
31078--31120
21
2.1
21
86
4
61
37
11
27
23
1.89
32185--32214
1
30.0
1
93
0
51
0
96
0
3
0.21
32183--32221
8
4.6
9
90
6
55
0
89
0
10
0.48

Tables:   1

The End!