genome.fa.s16007.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016007.1 Corchorus capsularis cultivar CVL-1 contig16028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217828

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282--316	14	2.5	14	85	0	52	80	0	14	5	0.89
3779--3874	31	3.1	31	95	3	167	19	14	22	42	1.88
6726--6768	20	2.2	20	84	15	56	39	20	11	27	1.88
11167--11475	162	1.9	162	91	1	512	32	11	19	35	1.88
13425--13454	15	2.0	15	93	0	51	43	13	13	30	1.82
14771--14829	22	2.7	22	91	0	100	15	25	25	33	1.95
15420--15458	2	20.0	2	94	5	71	51	0	0	48	1.00
15603--15813	109	1.9	108	81	2	253	27	18	18	35	1.94
19036--19213	96	1.9	96	98	0	347	29	17	16	36	1.92
23533--23569	19	2.0	18	89	5	56	29	21	8	40	1.82
25407--25454	21	2.3	21	85	7	62	16	27	18	37	1.92
28680--28715	19	1.9	18	88	5	54	41	2	22	33	1.68
35827--35870	21	2.1	21	87	8	63	11	20	18	50	1.77
42585--42631	23	2.0	23	87	0	67	40	36	8	14	1.77
47933--47996	30	2.2	30	88	5	96	14	10	34	40	1.80
49492--49544	27	2.0	26	88	3	79	32	24	20	22	1.98
50216--50272	15	3.9	15	74	4	62	15	22	5	56	1.60
50215--50279	15	4.4	15	72	3	51	15	21	4	58	1.55
50135--50343	116	1.8	116	80	9	257	17	20	7	54	1.66
50594--50711	34	3.4	34	78	15	150	25	16	9	48	1.76
50508--50711	71	2.9	70	86	9	254	25	18	8	47	1.77
50689--50836	55	2.7	55	84	6	192	24	18	9	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50599--50984	175	2.2	173	83	6	479	25	18	7	48	1.73
50774--50885	34	3.2	34	70	16	93	25	16	7	50	1.70
50893--50985	26	3.6	26	72	20	86	26	20	4	48	1.68
50845--50993	53	2.8	53	94	2	253	26	20	4	48	1.67
50722--50954	126	1.9	126	86	3	337	25	18	6	49	1.70
50876--51068	53	3.9	49	84	10	196	24	20	5	50	1.68
50968--51068	50	2.0	50	96	1	186	22	17	5	53	1.65
52023--52179	74	2.1	74	95	0	278	21	29	8	39	1.84
53139--53207	21	3.3	21	73	13	70	39	2	11	46	1.55
53437--53471	18	2.0	18	94	5	63	5	11	34	48	1.63
64635--64677	9	4.6	9	80	8	50	20	25	2	51	1.60
75718--75742	12	2.1	12	100	0	50	92	0	8	0	0.40
75718--75765	16	3.2	14	85	5	60	81	2	14	2	0.88
76826--76857	6	5.3	6	96	0	55	18	50	0	31	1.48
83316--83341	7	3.7	7	100	0	52	0	0	11	88	0.52
97971--98000	2	15.0	2	100	0	60	50	0	0	50	1.00
98440--98469	12	2.4	13	94	5	53	0	20	3	76	0.92
102851--102915	23	2.9	22	79	4	67	40	15	12	32	1.84
103006--103090	23	3.7	23	78	7	84	37	12	8	41	1.74
102808--103297	22	22.6	22	69	12	178	35	15	10	38	1.82
103247--103297	19	2.6	20	93	6	95	25	19	11	43	1.85
103403--103650	22	11.4	22	71	10	170	32	14	10	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103378--103571	88	2.2	88	80	6	207	33	12	9	44	1.75
103378--103720	22	15.4	23	68	17	149	33	14	9	41	1.79
103726--103784	22	2.7	22	79	10	66	35	15	10	38	1.81
103820--103959	22	6.3	22	76	6	120	38	20	9	32	1.84
104124--104161	19	2.0	20	85	15	53	63	2	5	28	1.30
104298--104374	38	2.1	35	85	7	100	57	14	15	12	1.66
108470--108501	14	2.3	14	94	0	55	15	18	15	50	1.79
115127--115166	2	20.0	2	100	0	80	50	0	0	50	1.00
116293--116341	13	3.8	13	76	12	57	0	18	2	79	0.83
116990--117039	20	2.6	19	87	6	75	52	0	0	48	1.00
116990--117045	20	3.1	18	82	12	69	46	0	0	53	1.00
119683--119708	6	4.3	6	100	0	52	69	15	0	15	1.20
126972--127007	19	1.9	18	88	5	54	41	2	22	33	1.68
129614--130201	294	2.0	294	98	0	1131	34	21	17	26	1.96
135836--135871	19	1.9	18	88	5	54	41	2	22	33	1.68
140044--140082	15	2.6	15	84	8	53	61	0	0	38	0.96
140028--140094	17	3.9	17	78	9	64	53	0	1	44	1.09
141719--141856	33	4.2	33	74	9	120	18	31	32	16	1.94
152265--152434	59	2.8	60	95	3	299	45	15	16	22	1.85
159443--159477	18	1.9	18	88	0	52	45	2	0	51	1.16
166561--166597	2	19.0	2	94	5	67	51	0	0	48	1.00
182705--182746	14	2.9	15	82	7	50	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182705--182744	21	2.0	21	95	5	73	70	0	0	30	0.88
183655--183680	7	3.7	7	100	0	52	15	0	0	84	0.62
198586--198642	29	2.0	29	96	0	105	54	7	26	12	1.63
200541--200606	33	2.0	33	93	0	114	27	12	36	24	1.91
202164--202189	13	2.0	13	100	0	52	7	15	15	61	1.55
214584--214617	2	17.0	2	100	0	68	0	50	0	50	1.00

Tables:   1

The End!