Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016008.1 Corchorus capsularis cultivar CVL-1 contig16029, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95117

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9073--9109
18
2.1
18
89
0
56
18
32
18
29
1.96
31658--31887
121
1.9
121
97
0
433
24
27
16
31
1.96
32759--32830
33
2.2
33
92
4
121
19
29
2
48
1.63
32863--32967
33
3.2
33
100
0
210
31
20
20
28
1.97
33886--33969
42
2.0
42
88
0
123
29
13
23
33
1.93
38647--38705
31
1.9
31
85
0
82
32
18
5
44
1.72
40169--40220
22
2.5
20
72
9
52
51
0
1
46
1.12
40157--40231
31
2.3
30
80
11
78
57
0
2
40
1.13
50208--50244
19
1.9
19
88
0
56
43
8
8
40
1.64
50306--50330
4
6.2
4
100
0
50
24
0
0
76
0.80
55017--55290
108
2.5
109
92
5
446
38
11
1
48
1.50
63219--63249
13
2.4
13
94
0
53
3
6
0
90
0.55
64211--64279
34
2.1
33
91
5
113
47
8
20
23
1.77
64221--64285
20
3.5
20
66
30
63
47
12
20
20
1.81
66524--66564
20
2.0
20
100
0
82
51
0
29
19
1.47
66524--66577
20
2.8
20
88
8
67
55
0
27
16
1.42
66840--67068
112
2.0
112
83
1
289
30
16
16
37
1.91
68979--69011
2
16.0
2
93
6
57
48
0
3
48
1.17
76172--76274
48
2.1
48
98
0
197
30
16
28
25
1.97
85004--85054
25
2.0
25
100
0
102
23
21
15
39
1.92
87812--87851
22
1.9
20
90
10
62
40
12
5
42
1.64

Tables:   1

The End!