Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01016010.1 Corchorus capsularis cultivar CVL-1 contig16031, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 70376
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:118 original size:25 final size:24
Alignment explanation
Indices: 80--130 Score: 84
Period size: 25 Copynumber: 2.1 Consensus size: 24
70 TTATATACAA
80 TATACAAAACAATTCTTAATTACT
1 TATACAAAACAATTCTTAATTACT
*
104 TATACAATAACAATTCTTAATTCCT
1 TATACAA-AACAATTCTTAATTACT
129 TA
1 TA
131 ATTAATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 7 0.28
25 18 0.72
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (24 bp):
TATACAAAACAATTCTTAATTACT
Found at i:1073 original size:5 final size:5
Alignment explanation
Indices: 1063--1115 Score: 51
Period size: 5 Copynumber: 11.0 Consensus size: 5
1053 GTTTTTATGA
*
1063 TTAAT TTAAT TTAAT TTAAT TGTGA- TTAAT TT-A- TTAA- TTAAT TTAAT
1 TTAAT TTAAT TTAAT TTAAT T-TAAT TTAAT TTAAT TTAAT TTAAT TTAAT
1110 ATTAAT
1 -TTAAT
1116 ACAATCTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
3 2 0.05
4 8 0.20
5 24 0.59
6 7 0.17
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
TTAAT
Found at i:8158 original size:19 final size:19
Alignment explanation
Indices: 8134--8179 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
8124 TTATGTAGAA
*
8134 ATTTAATTCTTAACGTTAT
1 ATTTAATTCTTAACATTAT
8153 ATTTAATTCTTAACATTAT
1 ATTTAATTCTTAACATTAT
*
8172 ATTCAATT
1 ATTTAATT
8180 TTATTAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (19 bp):
ATTTAATTCTTAACATTAT
Found at i:12640 original size:17 final size:18
Alignment explanation
Indices: 12603--12640 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
12593 ATATCCTCCT
12603 TTTATTGTTTTGTACTATAA
1 TTTATTGTTTTG-A-TATAA
12623 TTTATTGTTTTG-TATAA
1 TTTATTGTTTTGATATAA
12640 T
1 T
12641 ATGATTATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
20 12 0.67
ACGTcount: A:0.24, C:0.03, G:0.11, T:0.63
Consensus pattern (18 bp):
TTTATTGTTTTGATATAA
Found at i:18144 original size:93 final size:93
Alignment explanation
Indices: 17985--18174 Score: 344
Period size: 93 Copynumber: 2.0 Consensus size: 93
17975 TCAGGCAACA
* *
17985 TCTCTTTGTCAATCGCTCCTGCGCAGTTCTGCTGAATCATTATCGCCTTCATCTTTACCTTCCAT
1 TCTCTTTGTCAATCACACCTGCGCAGTTCTGCTGAATCATTATCGCCTTCATCTTTACCTTCCAT
*
18050 AAGATGAAATCATTCGACCCATTGAATT
66 AAGATGAAATCATTCGACCCATTGAACT
*
18078 TCTCTTTGTCAATCACACCTGCGCAGTTCTGTTGAATCATTATCGCCTTCATCTTTACCTTCCAT
1 TCTCTTTGTCAATCACACCTGCGCAGTTCTGCTGAATCATTATCGCCTTCATCTTTACCTTCCAT
18143 AAGATGAAATCATTCGACCCATTGAACT
66 AAGATGAAATCATTCGACCCATTGAACT
18171 TCTC
1 TCTC
18175 AATGTCGAAT
Statistics
Matches: 93, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.36
Consensus pattern (93 bp):
TCTCTTTGTCAATCACACCTGCGCAGTTCTGCTGAATCATTATCGCCTTCATCTTTACCTTCCAT
AAGATGAAATCATTCGACCCATTGAACT
Found at i:19040 original size:33 final size:35
Alignment explanation
Indices: 18967--19053 Score: 151
Period size: 33 Copynumber: 2.5 Consensus size: 35
18957 CATACTTTTA
18967 ACAATGTACCGAGAAATTCTTGCAAAAAAAGAAAAT
1 ACAATGTACCGAGAAATTCTTGC-AAAAAAGAAAAT
19003 ACAATGTACCGAGAAATTCTTGC-AAAAA-AAAAT
1 ACAATGTACCGAGAAATTCTTGCAAAAAAGAAAAT
19036 ACAATGTACCGAGAAATT
1 ACAATGTACCGAGAAATT
19054 ACCTAAAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
33 23 0.45
34 5 0.10
36 23 0.45
ACGTcount: A:0.51, C:0.15, G:0.14, T:0.21
Consensus pattern (35 bp):
ACAATGTACCGAGAAATTCTTGCAAAAAAGAAAAT
Found at i:19063 original size:33 final size:32
Alignment explanation
Indices: 18967--19064 Score: 115
Period size: 33 Copynumber: 2.9 Consensus size: 32
18957 CATACTTTTA
*
18967 ACAATGTACCGAGAAATTCTTGCAAAAAAAGAAAAT
1 ACAATGTACCGAGAAATTC---CTAAAAAA-AAAAT
* *
19003 ACAATGTACCGAGAAATTCTTGCAAAAAAAAAT
1 ACAATGTACCGAGAAATTCCT-AAAAAAAAAAT
19036 ACAATGTACCGAGAAATTACCTAAAAAAA
1 ACAATGTACCGAGAAATT-CCTAAAAAAA
19065 TTTACCGAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
33 29 0.53
34 7 0.13
36 19 0.35
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.19
Consensus pattern (32 bp):
ACAATGTACCGAGAAATTCCTAAAAAAAAAAT
Found at i:19275 original size:20 final size:21
Alignment explanation
Indices: 19238--19277 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
19228 GCATGGACTA
19238 AATACTACTACTATATATAAC
1 AATACTACTACTATATATAAC
19259 AATA-TACTA-TATAATATAA
1 AATACTACTACTAT-ATATAA
19278 TATAATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.17
20 11 0.61
21 4 0.22
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (21 bp):
AATACTACTACTATATATAAC
Found at i:19279 original size:17 final size:18
Alignment explanation
Indices: 19246--19289 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
19236 TAAATACTAC
19246 TACTATAT-ATAACAATA
1 TACTATATAATAACAATA
*
19263 TACTATATAAT-ATAATA
1 TACTATATAATAACAATA
*
19280 TAATATATAA
1 TACTATATAA
19290 GATGATGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (18 bp):
TACTATATAATAACAATA
Found at i:19552 original size:2 final size:2
Alignment explanation
Indices: 19502--19532 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
19492 AGTAATAGTC
19502 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
19533 TTACTCCAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19778 original size:2 final size:2
Alignment explanation
Indices: 19771--19799 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
19761 ATAATAGCGC
19771 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
19800 AGTACATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20123 original size:2 final size:2
Alignment explanation
Indices: 20116--20140 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
20106 TCATTACACA
20116 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
20141 GAGTTTGAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:24160 original size:2 final size:2
Alignment explanation
Indices: 24153--24183 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
24143 CATGATCTTT
24153 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24184 CTGAAATTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26579 original size:63 final size:62
Alignment explanation
Indices: 26488--26672 Score: 272
Period size: 63 Copynumber: 3.0 Consensus size: 62
26478 GTTGCATGAA
26488 GTCGTGTTTAGTTTTATGATTTGTCGGTACAGAATTCAGCATGGTGTAATATATCTGCATTTG
1 GTCGTGTTTAGTTTTATGATTT-TCGGTACAGAATTCAGCATGGTGTAATATATCTGCATTTG
*
26551 GTCGTGTTTAGATTTATGATTTATCGGTACAGAATTCAGCATGGTGTAATATATCTGCATTTG
1 GTCGTGTTTAGTTTTATGATTT-TCGGTACAGAATTCAGCATGGTGTAATATATCTGCATTTG
* *
26614 GTGGTGTTTAGTTTTATGA-TTT--GT-C-GATATTCAGGATGGGTGTAATATATCTGCATTTG
1 GTCGTGTTTAGTTTTATGATTTTCGGTACAGA-ATTCAGCAT-GGTGTAATATATCTGCATTTG
26673 TTCAGAAAAG
Statistics
Matches: 115, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
57 2 0.02
58 9 0.08
59 23 0.20
61 1 0.01
62 2 0.02
63 78 0.68
ACGTcount: A:0.23, C:0.10, G:0.24, T:0.43
Consensus pattern (62 bp):
GTCGTGTTTAGTTTTATGATTTTCGGTACAGAATTCAGCATGGTGTAATATATCTGCATTTG
Found at i:31069 original size:6 final size:6
Alignment explanation
Indices: 31058--31100 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
31048 TTATGCTCCA
31058 CAAAAC CAAAAC CAAAAC CAAAAC CAAAAC CAAAAC CAAAAC C
1 CAAAAC CAAAAC CAAAAC CAAAAC CAAAAC CAAAAC CAAAAC C
31101 GAATCGAATC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.65, C:0.35, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAAAC
Found at i:51568 original size:31 final size:31
Alignment explanation
Indices: 51530--51592 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
51520 AGTGGGGGTG
*
51530 TGTTGGTTTCTTAAAGAAACAAAGAGATATA
1 TGTTGGTTTCTTAAAGAAACAAAAAGATATA
* *
51561 TGTTGGTTTCTTAGAGAAACAAAAAGTTATA
1 TGTTGGTTTCTTAAAGAAACAAAAAGATATA
51592 T
1 T
51593 CACTATGATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.40, C:0.06, G:0.19, T:0.35
Consensus pattern (31 bp):
TGTTGGTTTCTTAAAGAAACAAAAAGATATA
Found at i:52755 original size:34 final size:32
Alignment explanation
Indices: 52717--52788 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
52707 TTGTTGAAGG
* *
52717 TATTTGTTCATAAGTGAACAATTATGAAGAGATT
1 TATTTGTTC-T-AGTGAACAATTATGAAAAGACT
**
52751 TATTTG-TCTTTTGAACAATTATGAAAAGACT
1 TATTTGTTCTAGTGAACAATTATGAAAAGACT
52782 TATTTGT
1 TATTTGT
52789 CTATAAAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
31 24 0.73
32 1 0.03
33 2 0.06
34 6 0.18
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (32 bp):
TATTTGTTCTAGTGAACAATTATGAAAAGACT
Found at i:52768 original size:31 final size:31
Alignment explanation
Indices: 52731--52790 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
52721 TGTTCATAAG
* *
52731 TGAACAATTATGAAGAGATTTATTTGTCTTT
1 TGAACAATTATGAAAAGACTTATTTGTCTTT
52762 TGAACAATTATGAAAAGACTTATTTGTCT
1 TGAACAATTATGAAAAGACTTATTTGTCT
52791 ATAAAAGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (31 bp):
TGAACAATTATGAAAAGACTTATTTGTCTTT
Found at i:52869 original size:37 final size:37
Alignment explanation
Indices: 52819--52889 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
52809 ATATAATTAT
* * *
52819 TCATAAAGTTATGTCTATTTGGAAAGACATGTATTGA
1 TCATAAAATTATGTCTATATGAAAAGACATGTATTGA
52856 TCATAAAATTATGTCTATATGAAAAGACATGTAT
1 TCATAAAATTATGTCTATATGAAAAGACATGTAT
52890 GTTGATCAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.37
Consensus pattern (37 bp):
TCATAAAATTATGTCTATATGAAAAGACATGTATTGA
Found at i:58608 original size:15 final size:14
Alignment explanation
Indices: 58584--58613 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
58574 ATTAAACTTC
58584 AAAAAAAAAAAAGA
1 AAAAAAAAAAAAGA
58598 AAAAAAGAAAAAAGA
1 AAAAAA-AAAAAAGA
58613 A
1 A
58614 CATGGTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAGA
Found at i:58804 original size:13 final size:13
Alignment explanation
Indices: 58786--58812 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58776 AACCATCCCA
58786 TAGGAGCCATGCT
1 TAGGAGCCATGCT
58799 TAGGAGCCATGCT
1 TAGGAGCCATGCT
58812 T
1 T
58813 CCCCTCCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.26
Consensus pattern (13 bp):
TAGGAGCCATGCT
Found at i:66075 original size:23 final size:23
Alignment explanation
Indices: 66033--66077 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
66023 AAAAATCGAG
* **
66033 CTCCCATTTGACCCTTAACCGGT
1 CTCCCACTTGACCCCCAACCGGT
66056 CTCCCACTTGACCCCCAACCGG
1 CTCCCACTTGACCCCCAACCGG
66078 GCCCCCAGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.47, G:0.13, T:0.22
Consensus pattern (23 bp):
CTCCCACTTGACCCCCAACCGGT
Found at i:66084 original size:23 final size:23
Alignment explanation
Indices: 66035--66084 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
66025 AAATCGAGCT
* ** * *
66035 CCCATTTGACCCTTAACCGGTCT
1 CCCACTTGACCCCCAACCGGGCC
66058 CCCACTTGACCCCCAACCGGGCC
1 CCCACTTGACCCCCAACCGGGCC
66081 CCCA
1 CCCA
66085 GTTTGGGGTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.50, G:0.14, T:0.18
Consensus pattern (23 bp):
CCCACTTGACCCCCAACCGGGCC
Found at i:68600 original size:33 final size:33
Alignment explanation
Indices: 68540--68629 Score: 92
Period size: 33 Copynumber: 2.8 Consensus size: 33
68530 CCACGGGTCG
* * * *
68540 GGTCGCAACCAGATCGCAACCG-CCCGTGGCCC
1 GGTCGCGACCGGATCGCGACTGACCCGTGGCCC
* * * *
68572 GGTCGCGATCGGATCTCGACTGACCCGTGGTCG
1 GGTCGCGACCGGATCGCGACTGACCCGTGGCCC
*
68605 GGTCGCGACCTGATCGCGACTGACC
1 GGTCGCGACCGGATCGCGACTGACC
68630 TATGGTCAGA
Statistics
Matches: 46, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
32 16 0.35
33 30 0.65
ACGTcount: A:0.16, C:0.37, G:0.32, T:0.16
Consensus pattern (33 bp):
GGTCGCGACCGGATCGCGACTGACCCGTGGCCC
Found at i:68636 original size:33 final size:33
Alignment explanation
Indices: 68572--68646 Score: 87
Period size: 33 Copynumber: 2.3 Consensus size: 33
68562 CCCGTGGCCC
* * * *
68572 GGTCGCGATCGGATCTCGACTGACCCGTGGTCG
1 GGTCGCGACCGGATCGCGACTGACCCATGGTCA
* *
68605 GGTCGCGACCTGATCGCGACTGACCTATGGTCA
1 GGTCGCGACCGGATCGCGACTGACCCATGGTCA
*
68638 GATCGCGAC
1 GGTCGCGAC
68647 TTAGCCTTAG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (33 bp):
GGTCGCGACCGGATCGCGACTGACCCATGGTCA
Found at i:70062 original size:23 final size:23
Alignment explanation
Indices: 70031--70084 Score: 81
Period size: 23 Copynumber: 2.3 Consensus size: 23
70021 TAATACTCTG
* * *
70031 AAATCTTGATAAATCTTCCTATA
1 AAATTTTGATAAACCTCCCTATA
70054 AAATTTTGATAAACCTCCCTATA
1 AAATTTTGATAAACCTCCCTATA
70077 AAATTTTG
1 AAATTTTG
70085 TTGACTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.39, C:0.17, G:0.06, T:0.39
Consensus pattern (23 bp):
AAATTTTGATAAACCTCCCTATA
Found at i:70144 original size:22 final size:22
Alignment explanation
Indices: 70117--70190 Score: 94
Period size: 22 Copynumber: 3.4 Consensus size: 22
70107 ATAACTACAA
*
70117 ATTTTGATAACCTCCCTATGAT
1 ATTTTGATAATCTCCCTATGAT
* ** *
70139 TTTTTGATAATCTCATTATGAA
1 ATTTTGATAATCTCCCTATGAT
*
70161 ATTTTGTTAATCTCCCTATGAT
1 ATTTTGATAATCTCCCTATGAT
70183 ATTTTGAT
1 ATTTTGAT
70191 CTACATACTA
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (22 bp):
ATTTTGATAATCTCCCTATGAT
Found at i:70166 original size:44 final size:43
Alignment explanation
Indices: 70115--70216 Score: 127
Period size: 44 Copynumber: 2.3 Consensus size: 43
70105 TGATAACTAC
*
70115 AAATTTTGATAACCTCCCTATGATTTTTTGATAATCT-CAT-TATG
1 AAATTTTGATAACCTCCCTATGATATTTTG---ATCTACATATATG
* *
70159 AAATTTTGTTAATCTCCCTATGATATTTTGATCTACATACTATG
1 AAATTTTGATAACCTCCCTATGATATTTTGATCTACATA-TATG
70203 AAATTTTGATAACC
1 AAATTTTGATAACC
70217 CTCTTATAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
41 4 0.08
42 3 0.06
44 43 0.86
ACGTcount: A:0.31, C:0.16, G:0.09, T:0.44
Consensus pattern (43 bp):
AAATTTTGATAACCTCCCTATGATATTTTGATCTACATATATG
Done.