Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016012.1 Corchorus capsularis cultivar CVL-1 contig16033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99014

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
389--418
2
15.0
2
100
0
60
50
0
0
50
1.00
3557--3863
158
2.0
156
90
2
481
29
10
19
40
1.85
4026--4077
11
4.8
11
75
13
54
76
17
5
0
0.97
4031--4079
17
3.1
16
75
18
57
75
16
8
0
1.03
4257--4291
11
3.2
11
83
0
52
77
17
5
0
0.96
3872--4326
232
2.0
231
88
3
682
44
19
8
27
1.79
4790--4851
31
2.0
32
87
6
92
29
14
4
51
1.63
5082--5304
22
10.1
23
75
13
141
42
9
14
33
1.78
5278--5336
30
2.0
30
96
0
109
45
11
10
32
1.74
5446--5960
22
23.6
22
67
10
155
39
8
16
35
1.79
5613--5671
25
2.4
25
88
5
86
40
3
13
42
1.61
11667--11710
22
2.0
22
86
8
63
43
9
4
43
1.56
11710--11785
22
3.5
21
80
8
71
34
13
7
44
1.72
12058--12124
23
3.0
23
87
10
102
37
16
4
41
1.69
11883--12265
45
8.7
45
69
13
172
37
15
8
38
1.78
11881--12284
22
18.5
22
70
11
147
36
15
8
38
1.79
11976--12273
155
1.9
151
81
11
358
35
16
7
40
1.76
12565--12688
22
5.8
21
79
11
87
37
12
10
40
1.77
12589--12688
41
2.4
43
85
11
136
37
12
11
40
1.78
12786--12933
22
6.7
22
76
9
131
37
17
8
36
1.81
12772--13141
44
8.5
43
69
11
175
36
15
8
38
1.79
12976--13083
46
2.4
45
80
6
112
37
15
9
37
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13023--13175
22
7.0
21
69
21
91
36
15
12
35
1.85
12941--13141
66
3.0
65
81
7
224
36
14
9
38
1.79
12941--13176
66
3.6
65
80
7
192
36
15
10
37
1.81
14353--14415
31
2.1
28
82
8
72
52
6
14
26
1.65
14577--14745
22
7.6
22
67
9
67
34
13
9
42
1.77
14812--14893
22
3.7
21
80
9
60
37
10
12
39
1.78
14870--14940
25
2.9
25
83
4
92
38
16
7
38
1.76
14838--14941
48
2.3
45
83
6
120
39
13
8
38
1.75
14836--15086
22
11.5
22
71
13
103
35
14
9
41
1.77
15235--15314
22
3.6
22
77
9
83
35
13
10
41
1.78
15364--15428
21
2.8
24
86
11
91
32
12
12
43
1.79
15664--15725
30
2.0
31
90
3
99
51
3
12
32
1.56
16344--16381
11
3.5
11
85
10
51
57
2
0
39
1.12
16584--16631
16
2.9
16
78
3
51
14
25
4
56
1.56
17379--17404
2
13.0
2
100
0
52
50
0
0
50
1.00
18932--18958
8
3.4
8
100
0
54
51
11
0
37
1.37
19157--19585
214
2.0
214
99
0
840
36
7
18
38
1.79
19724--19852
70
1.9
70
91
3
217
25
20
8
45
1.79
26186--26317
69
2.0
66
88
5
194
40
10
23
25
1.87
35883--35924
4
10.5
4
100
0
84
23
0
26
50
1.50
45546--45572
2
13.5
2
100
0
54
48
0
0
51
1.00
50390--50479
45
2.0
45
93
0
153
24
23
20
32
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50674--50708
2
17.5
2
100
0
70
48
0
0
51
1.00
59921--59950
1
30.0
1
100
0
60
0
0
0
100
0.00
66354--66386
2
16.5
2
100
0
66
51
0
0
48
1.00
66508--66571
32
2.0
32
96
0
119
35
12
14
37
1.83
68598--68730
22
5.8
24
79
10
136
37
9
17
36
1.81
75295--75551
22
11.6
22
74
8
175
38
8
15
37
1.79
75295--75791
44
10.9
44
71
16
234
39
9
15
35
1.81
75287--75527
66
3.7
66
85
1
279
37
9
16
36
1.80
75578--75787
22
9.3
22
78
12
160
40
10
15
33
1.82
75645--75787
45
3.2
44
88
6
200
40
11
15
32
1.82
75578--75791
67
3.2
66
81
12
240
40
10
15
33
1.82
75851--76021
22
8.0
21
67
13
80
38
8
12
40
1.75
75861--75937
22
3.5
21
81
11
84
42
6
14
36
1.71
75928--76000
22
3.4
22
75
7
87
34
10
6
47
1.65
75950--76020
20
3.5
20
77
7
79
36
9
11
42
1.74
75928--76023
42
2.3
42
96
0
174
34
10
10
44
1.73
75950--76041
42
2.2
42
88
0
130
38
9
11
40
1.75
76095--76139
16
2.6
18
89
10
67
40
6
11
42
1.67
76178--76246
22
3.1
22
78
0
75
34
11
14
39
1.82
76293--76531
22
10.9
22
81
11
215
38
10
16
35
1.82
76291--76486
89
2.2
88
80
7
227
38
10
17
33
1.83
98188--98605
212
2.0
212
96
1
768
38
8
8
44
1.65

Tables:   1

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