Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016014.1 Corchorus capsularis cultivar CVL-1 contig16035, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26224

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48--85
2
19.0
2
100
0
76
50
0
0
50
1.00
1620--1647
7
4.0
7
100
0
56
85
14
0
0
0.59
6487--6527
21
2.0
21
90
9
66
51
17
7
24
1.70
7915--7963
25
2.0
24
88
7
73
63
10
10
16
1.52
7924--7971
25
1.9
25
91
0
78
66
8
10
14
1.43
10237--10341
52
2.0
52
98
0
201
40
10
16
33
1.82
15426--15507
31
2.6
31
92
0
128
41
31
9
17
1.82
20987--21026
18
2.2
18
100
0
80
30
22
5
42
1.75
21084--21109
10
2.6
10
100
0
52
0
7
0
92
0.39
21601--21641
21
2.0
21
85
9
57
43
7
2
46
1.44
23161--23678
258
2.0
258
100
0
1036
33
11
10
44
1.75

Tables:   1

The End!