Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016015.1 Corchorus capsularis cultivar CVL-1 contig16036, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97539

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--78
2
40.0
2
94
5
142
0
51
0
48
1.00
1930--2039
55
2.0
55
96
0
202
33
13
13
39
1.84
4411--4435
2
12.5
2
100
0
50
52
0
0
48
1.00
4825--4868
14
3.1
14
81
12
54
75
6
13
4
1.17
6434--6658
45
5.0
44
91
3
351
27
13
31
28
1.94
14930--14975
23
2.0
23
100
0
92
39
43
8
8
1.66
27803--27827
2
12.5
2
100
0
50
48
0
0
52
1.00
28514--28544
2
16.0
2
93
6
55
48
0
0
51
1.00
40758--40783
10
2.6
10
100
0
52
30
7
23
38
1.83
49656--49705
26
1.9
26
95
0
91
68
0
8
24
1.16
49655--49699
13
3.5
13
76
11
56
71
0
8
20
1.12
49880--49984
52
2.0
52
94
0
183
27
31
3
37
1.75
57452--57540
45
2.0
45
91
4
146
14
11
16
57
1.65
57929--57972
21
2.1
21
100
0
88
11
9
36
43
1.72
58994--59023
12
2.6
12
94
5
53
53
20
6
20
1.67
63271--63364
32
2.8
32
78
12
93
35
13
14
36
1.86
65512--65554
22
2.0
22
86
9
61
58
6
2
32
1.38
66490--67434
444
2.1
444
84
4
1238
43
12
13
30
1.82
67295--67319
9
2.8
9
100
0
50
80
12
0
8
0.92
71176--71206
2
15.5
2
100
0
62
48
0
0
51
1.00
71834--71878
22
2.0
22
100
0
90
51
0
17
31
1.46
72160--72232
29
2.5
29
80
8
94
17
27
19
35
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74269--74340
30
2.4
30
83
2
92
29
27
13
29
1.95
77555--77586
2
16.0
2
93
0
55
53
0
46
0
1.00
77800--77861
30
2.1
30
87
6
90
30
12
9
46
1.74
81823--81881
31
1.9
31
89
6
93
44
10
13
32
1.77
91013--91067
23
2.5
21
78
18
58
27
7
21
43
1.79
91031--91067
4
9.5
4
88
5
58
27
2
24
45
1.66
97421--97446
2
13.0
2
100
0
52
50
0
0
50
1.00
97480--97509
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!