Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016016.1 Corchorus capsularis cultivar CVL-1 contig16037, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67209

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9134--9159
2
13.0
2
100
0
52
50
0
0
50
1.00
19164--19220
23
2.3
25
79
14
64
47
10
0
42
1.38
20261--20341
40
2.0
40
97
0
153
33
9
24
32
1.88
20649--20692
17
2.5
17
81
3
52
77
2
18
2
0.98
20667--20692
12
2.2
12
100
0
52
76
0
23
0
0.78
45396--45434
6
6.5
6
100
0
78
48
15
0
35
1.45
57767--57792
2
13.0
2
100
0
52
50
0
50
0
1.00
58116--58223
21
4.9
21
67
16
65
42
1
13
41
1.55
58285--58465
50
3.6
50
74
5
168
44
6
14
34
1.71
59006--59832
41
19.3
45
72
16
287
14
26
20
38
1.92
58988--59249
93
2.8
91
76
10
237
15
27
21
35
1.93
59177--59963
41
18.9
41
74
11
525
14
26
20
39
1.91
59176--59963
289
2.7
289
80
10
775
14
26
20
39
1.91
59629--59855
87
2.6
87
86
6
316
14
28
19
37
1.90
59217--59962
80
9.0
82
77
11
523
14
26
20
39
1.91
59921--60066
49
3.0
49
88
0
220
10
21
23
43
1.85
65080--65844
36
21.1
35
75
11
548
44
10
18
27
1.82
65092--65675
114
5.3
108
77
11
439
44
10
17
27
1.82
66349--66382
17
2.0
17
100
0
68
17
23
23
35
1.95
66829--66872
22
2.0
22
90
0
70
27
22
22
27
1.99

Tables:   1

The End!