Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016018.1 Corchorus capsularis cultivar CVL-1 contig16039, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49392

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84--238
72
2.2
68
84
6
186
34
11
0
52
1.42
2492--2756
135
2.0
135
85
5
369
29
12
13
44
1.80
4107--4156
20
2.5
20
83
3
64
34
6
22
38
1.78
7933--7973
21
2.0
21
90
0
64
78
2
0
19
0.87
7940--7973
16
2.1
16
88
0
50
79
2
0
17
0.86
7934--7976
5
8.4
5
84
5
50
76
2
0
20
0.89
11551--11575
11
2.3
11
100
0
50
24
36
0
40
1.55
17567--17625
29
2.0
29
100
0
118
33
28
20
16
1.95
24678--24716
3
13.0
3
100
0
78
66
0
33
0
0.92
27458--27488
5
6.2
5
100
0
62
58
0
0
41
0.98
39310--39377
22
3.1
22
87
4
93
14
39
8
36
1.78

Tables:   1

The End!