Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016019.1 Corchorus capsularis cultivar CVL-1 contig16040, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55618

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9299--9367
22
3.1
22
79
8
77
37
17
11
33
1.86
9356--9435
23
3.5
23
82
1
99
40
11
6
42
1.66
9334--9435
45
2.3
46
84
6
129
38
12
8
40
1.75
9502--9604
22
4.7
22
84
9
138
35
10
9
43
1.72
9503--9626
66
1.9
66
94
0
221
37
9
9
43
1.71
9503--9648
44
3.3
43
80
14
156
37
10
9
42
1.72
9503--9649
22
6.8
20
77
16
116
38
10
9
42
1.71
9504--9648
66
2.2
66
88
4
213
37
10
9
42
1.72
11043--11094
22
2.4
22
87
3
79
36
9
7
46
1.66
25852--25895
22
2.0
22
100
0
88
36
13
13
36
1.85
26043--26653
22
28.0
22
66
13
165
37
15
9
37
1.80
26336--26437
23
4.5
23
82
4
102
37
14
7
40
1.75
26314--26437
45
2.8
44
80
8
142
37
13
8
40
1.74
26666--26835
22
7.8
21
74
11
94
34
12
10
42
1.78
26665--26831
88
1.9
88
81
4
203
32
13
10
42
1.79
26942--27299
22
16.5
21
68
15
146
36
18
8
35
1.82
27125--27299
44
4.0
43
81
7
165
38
17
9
34
1.83
27117--27302
66
2.8
66
76
11
166
38
18
9
33
1.83
27454--27491
19
2.0
20
85
15
53
63
2
5
28
1.30
27689--27751
31
2.0
31
84
6
83
49
3
12
34
1.57
28697--28837
31
4.5
31
85
0
183
17
23
26
32
1.97
34129--34266
69
2.0
69
100
0
276
31
17
20
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43415--43732
160
2.0
159
94
0
555
23
30
17
27
1.97
55357--55383
2
13.5
2
100
0
54
48
0
0
51
1.00

Tables:   1

The End!