Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016025.1 Corchorus capsularis cultivar CVL-1 contig16046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24604

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2463--2508
23
2.0
23
91
0
74
32
17
26
23
1.97
12554--12620
32
2.1
32
83
2
82
28
16
2
52
1.58
13000--13037
19
2.0
20
85
15
53
28
5
2
63
1.30
13204--13773
44
13.0
43
68
17
172
37
9
17
36
1.82
13204--13402
22
8.9
22
75
13
124
33
9
19
38
1.83
13465--13584
22
5.5
21
73
12
82
35
6
20
37
1.79
13607--14208
22
28.0
22
67
20
131
40
9
15
34
1.80
13881--13938
20
3.0
20
89
2
82
41
12
18
27
1.86
14072--14197
45
2.8
45
78
12
116
39
10
13
36
1.79
14140--14217
22
3.5
23
83
11
83
37
12
12
37
1.82
14358--14405
22
2.2
22
85
3
62
52
6
14
27
1.66
14689--14727
19
2.1
19
100
0
78
10
0
30
58
1.31
18442--18560
61
2.0
61
96
0
220
35
23
19
21
1.96
23983--24047
26
2.5
26
85
5
87
15
15
40
29
1.88

Tables:   1

The End!