Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016026.1 Corchorus capsularis cultivar CVL-1 contig16047, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15175

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
133--249
37
3.1
37
91
1
180
17
25
29
26
1.98
616--646
2
15.5
2
100
0
62
48
0
0
51
1.00
1619--2186
44
13.0
43
87
4
701
13
13
25
47
1.79
2198--2373
58
3.1
57
90
2
262
17
20
15
46
1.84
2880--2924
21
2.0
21
83
8
54
15
20
24
40
1.91
3167--3394
126
1.8
126
91
0
375
14
27
28
29
1.96
3418--3651
125
1.9
126
88
0
362
14
28
26
29
1.95
5722--5751
15
2.0
15
100
0
60
13
13
26
46
1.80
7866--7905
2
20.5
2
92
5
64
45
2
0
52
1.14
7837--7905
33
2.1
33
86
5
95
42
5
2
49
1.41
12641--12700
27
2.3
26
97
2
111
23
3
38
35
1.71
13650--13693
7
6.3
7
94
0
79
59
0
0
40
0.98

Tables:   1

The End!