Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016027.1 Corchorus capsularis cultivar CVL-1 contig16048, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101080

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9171--9211
3
13.7
3
100
0
82
0
31
0
68
0.90
11704--11889
44
4.3
44
73
14
154
41
11
11
34
1.79
11764--11887
22
5.8
21
76
12
101
43
12
9
34
1.75
11680--11841
22
7.5
21
78
8
114
42
13
10
33
1.79
11683--11892
44
4.8
43
75
13
137
42
10
12
33
1.78
11915--11985
21
3.3
22
81
16
78
40
4
21
33
1.72
12097--12200
22
4.7
22
84
0
118
32
13
14
39
1.85
25601--25634
15
2.2
16
90
10
54
20
8
11
58
1.59
26946--27036
31
2.9
31
96
0
164
36
7
16
39
1.77
27065--27135
37
1.9
37
94
0
124
38
9
15
36
1.81
29529--29588
31
1.9
31
96
0
111
35
8
16
40
1.79
29617--29687
37
1.9
37
94
0
124
38
8
16
36
1.80
36837--36884
22
2.2
22
81
7
53
72
8
4
14
1.23
41132--41840
357
2.0
356
98
0
1355
41
16
12
29
1.84
64074--64351
139
2.0
140
96
2
515
46
16
6
29
1.73
66746--66776
12
2.6
12
89
0
53
22
41
0
35
1.54
66947--67168
87
2.6
87
80
8
245
37
23
7
31
1.82
69772--69830
2
29.0
2
79
3
64
40
0
1
57
1.09
70668--70804
68
2.0
67
91
1
220
52
30
7
9
1.61
76703--76742
22
1.9
20
85
10
53
30
17
7
45
1.76
81593--81623
4
7.8
4
100
0
62
25
0
0
74
0.82
87154--87238
42
2.0
42
86
4
118
24
16
12
45
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94814--94859
18
2.6
18
93
3
76
50
8
10
30
1.68
94849--94879
15
2.1
15
94
5
55
38
9
6
45
1.63
95977--96019
13
3.2
13
75
12
50
69
0
0
30
0.88
95976--96019
15
3.1
15
75
24
58
70
0
0
29
0.88
100355--100383
1
29.0
1
100
0
58
0
0
0
100
0.00

Tables:   1

The End!