Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016029.1 Corchorus capsularis cultivar CVL-1 contig16050, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32182

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2210--2265
3
18.7
3
96
0
103
64
0
1
33
1.04
3124--3163
19
2.2
18
91
8
64
37
5
7
50
1.53
5328--5391
30
2.2
29
83
8
76
59
0
15
25
1.36
5864--5902
17
2.2
17
86
4
51
35
2
23
38
1.68
7924--7961
19
2.0
19
85
10
51
28
2
2
65
1.19
8127--8210
22
3.8
22
75
9
82
34
10
16
38
1.84
8128--8228
44
2.3
44
81
6
107
33
11
18
35
1.88
8159--8229
22
3.2
22
82
4
81
32
14
19
33
1.92
8195--8311
60
2.0
60
98
0
225
34
12
17
35
1.88
8451--8501
22
2.3
22
86
0
75
29
7
21
41
1.81
8462--8682
22
9.9
22
68
18
75
40
9
14
35
1.78
8600--8770
22
7.8
22
69
8
82
43
8
11
35
1.72
8858--8908
19
2.6
20
90
6
86
45
11
17
25
1.83
8869--9412
22
25.1
21
65
16
75
38
10
15
35
1.81
9020--9104
23
3.7
23
84
1
100
41
7
14
37
1.73
8896--9156
22
12.1
22
74
9
137
39
9
14
37
1.78
9041--9411
22
16.7
23
69
12
129
37
11
15
36
1.82
9195--9280
45
1.9
45
83
4
111
33
11
16
38
1.85
9533--9562
2
15.0
2
100
0
60
50
0
0
50
1.00
11701--11745
2
22.5
2
100
0
90
0
48
0
51
1.00
14679--14718
17
2.2
18
86
8
55
17
17
2
62
1.44
17494--17518
13
1.9
13
100
0
50
48
8
4
40
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17631--17672
19
2.3
18
84
8
57
61
0
4
33
1.17
17636--17672
19
2.0
19
89
5
58
64
0
2
32
1.07
23754--23800
17
2.8
17
87
12
71
12
2
6
78
1.02
31923--31963
21
2.0
21
100
0
82
29
19
17
34
1.94
31947--32022
29
2.5
30
79
12
84
27
27
11
32
1.92

Tables:   1

The End!