genome.fa.s16030.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016030.1 Corchorus capsularis cultivar CVL-1 contig16051, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71224

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2269--2296	2	14.0	2	100	0	56	50	0	50	0	1.00
2560--2635	31	2.5	30	85	4	100	34	15	25	25	1.95
2579--2638	31	1.9	31	96	0	111	33	15	20	31	1.93
6705--6729	4	6.2	4	100	0	50	24	0	0	76	0.80
8962--8986	7	3.6	7	100	0	50	44	0	0	56	0.99
11191--11741	183	3.0	183	98	1	1059	29	15	14	41	1.86
16283--16360	29	2.6	30	76	15	90	16	14	29	39	1.88
16707--16889	94	2.0	92	89	2	276	26	25	19	27	1.99
16981--17005	7	3.6	7	100	0	50	56	28	0	16	1.41
35768--35833	31	2.1	31	88	0	96	27	19	6	46	1.73
36142--36184	19	2.1	21	84	16	56	27	6	2	62	1.33
36574--36724	22	6.8	22	74	8	83	33	9	17	39	1.81
36755--36885	56	2.3	56	80	7	131	38	9	17	35	1.82
36826--36882	22	2.5	22	82	2	60	36	7	15	40	1.75
36912--37183	22	12.5	22	74	13	145	41	9	15	33	1.79
36967--37182	44	4.9	45	78	10	189	42	9	13	34	1.76
36990--37183	88	2.2	88	83	4	241	43	9	13	34	1.76
36992--37155	66	2.5	65	78	7	181	42	9	13	34	1.76
37264--37314	19	2.6	20	90	6	86	45	11	17	25	1.83
37470--37576	45	2.4	44	79	13	119	40	9	14	36	1.78
37264--37861	22	27.7	21	69	12	236	39	10	15	34	1.81
47401--47446	20	2.2	20	84	3	56	15	2	13	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49308--49366	28	2.1	28	100	0	118	25	3	23	47	1.67
49316--49375	28	2.5	22	70	27	57	21	3	23	51	1.62
62933--62961	15	1.9	15	100	0	58	34	17	0	48	1.47
64574--64683	44	2.5	45	80	7	118	36	18	12	32	1.88
64618--64703	45	1.9	45	80	4	102	37	16	12	33	1.87
64618--65023	22	18.6	22	68	15	114	36	14	10	38	1.82
64755--64878	45	2.8	45	80	8	121	37	13	10	38	1.79
65138--65352	22	9.7	22	71	6	94	35	15	9	39	1.79
65404--65455	22	2.4	22	80	0	68	40	19	9	30	1.83
65602--65711	22	5.0	22	79	6	98	35	18	10	35	1.86
66225--66290	31	2.1	31	88	5	98	45	4	21	28	1.71
68436--68504	29	2.3	30	87	5	95	18	18	17	44	1.86

Tables:   1

The End!