Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016033.1 Corchorus capsularis cultivar CVL-1 contig16054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53888

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1702--1801
31
3.3
30
87
5
148
22
23
19
36
1.95
5318--5414
31
3.2
30
82
11
135
30
18
26
23
1.98
9935--9993
31
1.9
31
86
6
84
33
15
3
47
1.62
10094--10170
38
2.1
35
85
7
100
11
15
14
58
1.63
10307--10345
19
2.0
20
85
14
55
33
2
2
61
1.23
10512--10596
22
3.9
21
76
11
82
37
10
15
36
1.82
10814--11067
22
11.5
22
69
18
120
42
10
14
32
1.80
10814--10914
21
4.6
22
74
15
84
43
9
13
32
1.78
11150--11200
19
2.6
20
90
6
86
45
9
19
25
1.81
11234--11726
22
22.6
22
70
9
224
38
11
15
34
1.82
11867--11911
3
15.0
3
100
0
90
66
0
0
33
0.92
14707--14748
21
2.0
20
82
17
50
4
9
33
52
1.55
22127--22168
20
2.1
20
95
0
75
26
11
23
38
1.90
26811--26882
38
1.9
37
85
2
99
34
18
9
37
1.83
27857--27904
5
9.6
5
97
0
69
39
27
0
33
1.57
32706--32750
22
2.0
22
86
0
63
24
20
20
35
1.96
32820--32874
27
2.0
27
100
0
110
52
7
7
32
1.56
33082--33110
5
5.8
5
100
0
58
20
0
0
79
0.74
42611--42654
16
2.6
17
78
7
54
0
6
15
77
0.97
42629--42663
11
3.2
11
91
0
61
0
2
17
80
0.84
45930--45987
16
3.7
16
88
4
91
8
13
37
39
1.76
45976--46023
17
2.8
17
80
0
60
4
22
45
27
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48449--48493
21
2.1
21
88
8
65
17
33
11
37
1.85
48693--48760
32
2.1
32
97
0
127
16
33
36
13
1.87
48751--48826
33
2.3
33
93
4
127
9
27
43
19
1.81
48751--48802
16
3.2
16
69
15
52
7
28
44
19
1.78

Tables:   1

The End!