Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016036.1 Corchorus capsularis cultivar CVL-1 contig16057, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41962

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2705--2936
100
2.3
100
90
1
358
40
4
17
36
1.71
2725--2890
50
3.3
50
79
5
201
40
3
17
38
1.67
2708--2936
50
4.6
50
73
4
178
40
4
17
36
1.71
3693--3987
55
5.4
55
95
0
520
49
6
17
26
1.71
4001--4032
16
2.1
15
94
5
55
43
6
18
31
1.75
4306--4612
21
14.0
21
74
13
194
56
6
20
16
1.62
4328--4715
21
17.9
21
72
13
186
55
7
19
18
1.65
4350--4409
29
2.1
29
81
9
70
58
3
18
20
1.53
4306--4612
43
7.0
42
73
14
185
56
6
20
16
1.62
6114--6150
11
3.4
11
88
0
56
70
0
21
8
1.13
7813--7949
31
4.4
31
87
0
193
32
27
22
16
1.96
7819--7992
93
1.9
93
81
2
215
35
26
21
17
1.95
10795--10834
20
2.1
20
86
9
57
57
5
5
32
1.42
29133--29187
27
2.0
27
92
0
92
7
25
7
60
1.49
30029--30106
41
1.9
41
89
0
120
39
19
12
28
1.88
34477--34794
114
2.9
107
78
7
366
25
15
22
35
1.94
34798--34836
20
1.9
21
89
5
62
7
20
28
43
1.79

Tables:   1

The End!