Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016037.1 Corchorus capsularis cultivar CVL-1 contig16058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75702

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3753--4001
42
5.9
42
73
5
157
30
34
12
21
1.91
3765--4117
84
4.2
84
84
6
378
30
36
12
20
1.90
3810--4167
42
8.5
42
78
5
332
30
35
12
20
1.91
14103--14159
3
19.0
3
86
13
82
36
0
0
63
0.95
14731--14762
15
2.1
15
100
0
64
28
0
28
43
1.55
22807--22839
1
33.0
1
100
0
66
100
0
0
0
0.00
30015--30044
1
30.0
1
100
0
60
100
0
0
0
0.00
49561--49605
20
2.2
20
84
4
54
66
8
8
15
1.43
50320--50354
17
2.1
17
94
0
61
62
17
8
11
1.52
54999--55042
2
22.0
2
100
0
88
50
50
0
0
1.00
55796--55820
13
1.9
13
100
0
50
16
16
24
44
1.86
55975--56094
27
4.5
27
79
11
131
5
27
21
45
1.75
60015--60081
15
4.5
15
92
0
98
38
7
47
5
1.56
61194--61231
2
19.0
2
100
0
76
50
0
0
50
1.00
61773--61830
30
1.9
30
92
0
98
8
10
18
62
1.53
70527--71003
158
3.0
158
96
0
884
34
19
13
31
1.91
74337--74368
14
2.3
14
100
0
64
43
18
12
25
1.85

Tables:   1

The End!