Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016038.1 Corchorus capsularis cultivar CVL-1 contig16059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18503

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6959--7033
30
2.5
31
82
6
91
29
26
16
28
1.96
7971--8057
27
3.3
26
78
10
106
41
3
9
45
1.53
7971--8067
24
3.8
25
77
10
97
43
3
9
44
1.52
8869--8903
3
11.7
3
100
0
70
31
0
0
68
0.90
10347--10396
6
8.5
6
83
16
61
36
16
0
48
1.46
11358--11442
22
3.9
22
74
10
84
35
10
16
37
1.83
11480--11529
22
2.2
23
82
10
59
26
4
24
46
1.70
11561--11603
22
2.0
22
86
9
61
41
9
18
30
1.82
11594--11690
22
4.4
21
71
17
72
35
8
18
38
1.81
11675--11892
22
9.7
22
66
18
76
42
10
12
34
1.77
11710--11956
22
11.3
22
69
10
98
42
10
14
33
1.79
11763--11827
21
2.8
24
84
11
82
43
10
12
33
1.77
12147--12304
82
1.9
83
83
3
203
42
7
15
34
1.75
12080--12511
22
19.7
22
72
13
205
37
10
15
36
1.81
12493--12539
22
2.1
22
84
7
60
55
4
14
25
1.58
14589--14617
14
2.0
15
93
6
51
55
34
10
0
1.34

Tables:   1

The End!