Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016039.1 Corchorus capsularis cultivar CVL-1 contig16060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73748

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
286--311
1
26.0
1
100
0
52
0
0
0
100
0.00
943--976
15
2.3
15
89
0
50
26
11
38
23
1.89
4232--4343
57
2.0
57
98
0
215
28
21
23
26
1.99
4130--4546
155
2.7
155
97
0
789
30
19
21
28
1.98
4387--4498
57
2.0
57
96
0
206
27
19
25
26
1.99
5012--5060
24
2.0
24
92
0
80
20
10
34
34
1.86
9450--9541
33
2.8
33
83
0
130
23
23
19
32
1.97
11759--11842
40
2.0
41
86
9
116
32
10
23
33
1.89
16418--16646
32
7.7
32
70
27
168
22
13
25
37
1.91
16338--16674
58
5.8
58
92
2
538
21
13
26
38
1.90
24874--24907
16
2.2
15
94
5
59
20
0
29
50
1.49
27288--27344
20
2.8
20
81
5
62
17
8
7
66
1.41
34424--34546
58
2.1
58
89
3
185
25
13
21
39
1.89
38883--39256
202
1.8
203
91
0
624
29
20
9
40
1.84
41614--41672
23
2.6
23
83
5
75
20
8
8
62
1.49
49589--49634
17
2.8
16
87
6
65
8
10
4
76
1.15
60262--60301
16
2.5
16
95
0
71
47
37
12
2
1.55
60501--60608
32
3.4
31
85
5
144
37
37
10
14
1.80
60501--60601
16
6.3
15
67
11
58
37
36
9
15
1.81
63880--63921
11
3.8
11
81
12
59
40
19
2
38
1.64
63863--63921
22
3.0
19
81
15
75
37
20
3
38
1.69
63878--63920
22
2.0
22
100
0
86
41
18
2
37
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64646--64693
24
2.0
24
83
0
60
62
2
0
35
1.07
64963--65021
23
2.6
23
83
5
75
20
8
8
62
1.49
70693--70717
12
2.1
12
100
0
50
16
8
0
76
1.02

Tables:   1

The End!