Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016044.1 Corchorus capsularis cultivar CVL-1 contig16065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47505

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--91
2
45.0
2
97
2
173
1
49
0
49
1.08
77--159
42
2.0
43
92
4
143
25
19
14
40
1.89
1665--1704
19
2.1
19
100
0
80
22
5
20
52
1.65
1813--1856
20
2.2
20
88
4
63
36
15
6
40
1.74
3020--3090
29
2.4
29
85
2
97
16
29
16
36
1.92
3253--3335
29
2.9
29
78
3
87
39
13
27
19
1.89
5169--5202
16
2.1
16
100
0
68
44
11
11
32
1.77
12477--12541
31
2.1
31
94
0
112
41
23
12
23
1.87
14949--15002
21
2.5
22
82
14
60
35
1
0
62
1.06
15311--15339
3
9.7
3
100
0
58
34
0
0
65
0.93
15803--15962
63
2.5
65
89
5
254
46
10
14
28
1.76
15957--15984
2
14.0
2
100
0
56
50
0
0
50
1.00
24543--24573
15
2.0
16
93
6
55
32
0
38
29
1.57
28317--28344
4
7.0
4
100
0
56
75
0
25
0
0.81

Tables:   1

The End!