genome.fa.s16046.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016046.1 Corchorus capsularis cultivar CVL-1 contig16067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100175

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563--1128	55	10.3	55	85	4	725	50	5	18	26	1.68
1146--1409	72	3.7	71	77	12	222	48	6	18	27	1.72
1279--1406	39	3.4	39	73	20	146	48	6	19	25	1.72
1301--1423	32	3.6	32	73	20	106	47	6	21	25	1.74
1272--1451	72	2.5	72	90	0	270	48	6	19	25	1.71
1878--1944	26	2.5	27	83	9	93	55	2	17	23	1.56
8547--8605	16	3.7	16	77	8	75	3	8	35	52	1.49
10686--10725	21	1.9	21	85	10	55	52	20	17	10	1.72
16177--16491	28	11.0	27	71	14	206	39	19	15	25	1.91
16146--16491	57	6.1	57	93	0	566	39	19	15	25	1.91
23046--23117	36	2.0	36	94	2	128	16	22	11	50	1.77
24729--24758	1	30.0	1	93	0	51	96	0	0	3	0.21
27554--27599	2	23.0	2	100	0	92	50	50	0	0	1.00
30693--30764	37	1.9	37	94	0	126	51	12	8	27	1.68
31002--31034	11	2.9	12	91	8	52	0	21	0	78	0.75
33797--33851	26	2.2	26	84	12	71	16	36	32	14	1.89
43669--43767	50	2.0	50	100	0	198	50	12	19	18	1.77
53800--53867	29	2.4	28	88	7	102	26	22	4	47	1.70
56337--57507	438	2.7	436	84	3	1487	27	13	16	42	1.86
58785--58809	2	12.5	2	100	0	50	0	0	48	52	1.00
58980--59015	1	36.0	1	100	0	72	0	0	0	100	0.00
59541--59598	6	9.8	6	80	15	68	0	1	12	86	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59540--59598	9	6.6	9	74	25	54	0	1	11	86	0.65
59540--59598	13	4.8	13	80	12	72	0	1	11	86	0.65
59540--59598	19	3.3	19	90	6	88	0	1	11	86	0.65
60059--60141	42	2.0	42	95	2	150	28	8	26	36	1.86
66567--66631	33	2.0	33	84	6	87	12	41	38	7	1.71
66643--66685	20	2.2	19	87	4	59	0	23	2	74	0.93
67404--67633	31	7.5	31	78	12	201	34	18	19	26	1.95
67439--67601	60	2.7	60	93	1	265	34	19	20	26	1.96
67404--67633	91	2.5	91	80	9	238	34	18	19	26	1.95
67470--67570	29	3.4	29	70	15	89	31	19	21	26	1.98
67663--67828	31	5.5	30	70	16	119	26	19	19	34	1.95
67663--67824	60	2.7	60	88	0	234	25	19	19	35	1.95
68381--68501	32	3.5	32	81	18	161	38	13	15	32	1.86
68417--68494	41	1.9	41	97	2	149	39	14	14	32	1.85
69019--69095	33	2.3	33	88	0	118	19	41	28	10	1.84
69209--69283	33	2.3	33	85	0	96	14	32	34	18	1.91
70886--71518	35	18.1	35	90	0	899	32	17	10	39	1.84
70887--71428	17	30.9	19	67	15	310	32	17	10	38	1.84
74757--74834	39	2.0	39	100	0	156	41	23	7	28	1.82
79678--79704	2	13.5	2	100	0	54	48	0	0	51	1.00
80237--80276	2	20.0	2	89	0	62	47	2	0	50	1.14
82641--82668	14	2.0	14	100	0	56	21	14	14	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82859--82897	20	2.0	20	94	0	69	30	10	17	41	1.83
86201--86305	40	2.6	40	86	6	131	53	3	19	23	1.61
86303--86339	17	2.1	18	90	5	58	59	5	21	13	1.54
86425--86506	21	3.9	21	80	7	103	53	7	17	21	1.67
91403--91433	1	31.0	1	100	0	62	100	0	0	0	0.00
93342--93977	21	30.4	21	76	7	517	39	20	11	28	1.87
94181--94222	2	21.5	2	80	4	50	47	2	4	45	1.36
94272--94347	2	39.5	2	74	7	68	46	5	2	46	1.39
94396--94455	21	2.8	21	80	10	59	48	10	3	38	1.53
94414--94452	19	1.9	19	85	10	51	56	7	0	35	1.28
97216--97260	18	2.4	18	81	7	54	55	8	0	35	1.31
98132--98157	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!