Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016047.1 Corchorus capsularis cultivar CVL-1 contig16068, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35803

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--39
2
19.5
2
100
0
78
48
0
0
51
1.00
118--398
41
6.6
42
76
12
220
23
11
26
39
1.88
104--399
85
3.5
86
84
6
354
23
11
26
38
1.89
7321--7346
2
13.0
2
100
0
52
50
0
0
50
1.00
13581--13615
17
2.0
17
88
5
52
68
0
2
28
1.04
13702--13830
41
3.2
40
65
18
111
37
11
17
34
1.86
13665--13830
83
2.0
83
100
0
332
39
12
15
32
1.84
13665--13791
41
3.0
43
63
19
113
40
12
14
31
1.84
21318--21361
18
2.4
18
88
0
61
27
31
4
36
1.77
26030--26063
16
2.3
14
90
10
50
76
0
0
23
0.79
28169--28638
236
2.0
236
99
0
931
41
18
14
26
1.88
35635--35777
60
2.4
60
89
2
207
37
14
18
29
1.90

Tables:   1

The End!