Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016049.1 Corchorus capsularis cultivar CVL-1 contig16070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34152

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43--67
2
12.5
2
100
0
50
52
0
0
48
1.00
10425--10450
13
2.0
13
100
0
52
46
7
30
15
1.74
10629--10670
21
2.0
21
85
0
57
40
9
21
28
1.84
13290--13396
16
6.6
16
80
2
97
53
29
11
5
1.59
13289--13382
49
1.9
49
84
0
125
54
28
11
5
1.58
13544--13597
16
3.4
16
75
14
58
37
27
12
22
1.91
13557--13604
15
3.1
15
75
16
53
39
29
8
22
1.83
14366--14400
2
17.5
2
100
0
70
51
0
0
48
1.00
16490--16658
91
1.9
90
91
2
277
42
13
17
26
1.86
16715--16766
19
2.9
17
86
10
77
36
17
28
17
1.92
17348--17373
6
4.3
6
100
0
52
50
0
34
15
1.45
24751--24778
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!