Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016051.1 Corchorus capsularis cultivar CVL-1 contig16072, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41608

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1721--1783
31
2.1
30
88
5
92
39
6
19
34
1.77
1689--1834
76
1.9
76
98
0
283
37
7
15
39
1.75
3213--3484
109
2.5
109
92
4
440
48
2
11
38
1.51
3960--3992
17
2.0
17
88
5
50
63
0
0
36
0.95
5865--5902
20
1.9
20
88
0
58
42
0
0
57
0.98
6352--6593
102
2.3
102
86
3
322
40
9
7
42
1.65
6365--6593
107
2.2
100
86
3
260
40
9
7
41
1.67
7214--7263
25
2.0
25
92
0
82
38
16
2
44
1.59
7434--7469
13
2.7
13
91
4
54
30
2
13
52
1.55
8292--8566
109
2.5
109
93
4
455
38
11
1
48
1.48
12264--12329
23
2.9
23
88
0
96
34
21
31
12
1.90
15153--15199
24
1.9
25
91
4
78
23
14
25
36
1.93
16055--16090
11
3.4
11
88
7
56
69
5
16
8
1.33
16165--16251
29
3.0
29
100
0
174
37
20
13
27
1.91
17395--17425
14
2.1
15
94
5
55
32
0
3
64
1.09
19157--19203
6
8.2
6
82
17
64
85
14
0
0
0.61
19159--19205
7
6.9
7
85
9
62
85
14
0
0
0.61
19159--19214
29
1.9
29
85
7
78
82
17
0
0
0.68
32397--32426
1
30.0
1
100
0
60
100
0
0
0
0.00
38735--38761
7
3.9
7
100
0
54
29
14
11
44
1.80
40957--41027
37
1.9
37
88
0
106
26
21
35
16
1.95
40964--41027
20
3.4
19
74
12
60
28
21
35
14
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40963--41040
37
2.1
37
85
0
102
26
23
35
14
1.93

Tables:   1

The End!