Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016052.1 Corchorus capsularis cultivar CVL-1 contig16073, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38998

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3727--3752
6
4.3
6
100
0
52
61
38
0
0
0.96
12553--12600
13
3.7
13
80
0
60
56
8
6
29
1.53
13381--13488
53
2.1
52
96
1
198
38
13
7
39
1.73
15799--15835
19
1.9
19
88
0
56
59
8
13
18
1.58
22049--22073
6
4.2
6
100
0
50
16
0
68
16
1.22
23980--24005
2
13.0
2
100
0
52
50
50
0
0
1.00
24005--24032
2
14.0
2
100
0
56
50
0
0
50
1.00
24950--25039
44
2.0
44
87
4
128
32
31
4
32
1.78
25867--25899
2
17.0
2
93
6
59
48
0
0
51
1.00
35767--35818
3
17.3
3
92
7
88
65
0
0
34
0.93
37038--37062
2
12.5
2
100
0
50
52
0
0
48
1.00
38019--38132
9
13.0
9
71
14
53
49
0
0
49
1.13
38138--38172
15
2.3
15
100
0
70
31
0
5
62
1.18
38138--38182
15
2.9
15
90
6
54
31
2
6
60
1.35

Tables:   1

The End!