Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016060.1 Corchorus capsularis cultivar CVL-1 contig16081, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7576
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30


Found at i:6986 original size:23 final size:22

Alignment explanation


    Indices: 6947--6989  Score: 59
    Period size: 23  Copynumber: 1.9  Consensus size: 22

       6937 TTTGCGTAAG

                        *         
       6947 CAAAAATAATAATAATAAAATA
          1 CAAAAATAATAAAAATAAAATA

                     *           
       6969 CAAAAATTAGTAAAAATAAAA
          1 CAAAAA-TAATAAAAATAAAA

       6990 AGTATGTTTG


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  22    6  0.33
  23   12  0.67

ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21


Consensus pattern (22 bp):   
CAAAAATAATAAAAATAAAATA
Done.