Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016063.1 Corchorus capsularis cultivar CVL-1 contig16084, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11142
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.26


Found at i:3736 original size:63 final size:63

Alignment explanation


    Indices: 3558--3739  Score: 179
    Period size: 62  Copynumber: 2.9  Consensus size: 63

       3548 GTGTTGGTGG

                        * *         *       *                 **    **    *
       3558 TATTTTCAGACTGTATGTTTAATTATGTACTCAGAGTTTATGGTATTATTTGGCAGGGGATGG
          1 TATTTTCAGACTATGTGTTTAATTCTGTACTCGGAGTTTATGGTATTATTCAGCAGTAGATGC

             *   *                    **    * *    *                        
       3621 TGTTTCCAGACTATGT-TGTT-ATTCAATACTTGTAGTTCATGGTATTATTCAGCAGTAGATGC
          1 TATTTTCAGACTATGTGT-TTAATTCTGTACTCGGAGTTTATGGTATTATTCAGCAGTAGATGC

                                               *      *              
       3683 TATTTTCAGACTATGTGTTTAATTCTGTACTCGGAATTTATGATATTATTCAGCAGT
          1 TATTTTCAGACTATGTGTTTAATTCTGTACTCGGAGTTTATGGTATTATTCAGCAGT

       3740 GTATGATGTG


Statistics
Matches: 91,  Mismatches: 25, Indels: 6
        0.75            0.20        0.05

Matches are distributed among these distances:
  62   47  0.52
  63   44  0.48

ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43


Consensus pattern (63 bp):   
TATTTTCAGACTATGTGTTTAATTCTGTACTCGGAGTTTATGGTATTATTCAGCAGTAGATGC
Done.