Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016064.1 Corchorus capsularis cultivar CVL-1 contig16085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24561

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1776--1849
28
2.7
27
85
2
85
17
20
24
37
1.93
4321--4369
20
2.5
20
86
6
64
44
8
12
34
1.71
4352--4710
51
7.2
50
78
4
384
41
5
16
36
1.70
4343--4707
101
3.6
101
92
3
596
42
4
16
36
1.70
4343--4707
201
1.8
200
92
3
617
42
4
16
36
1.70
5422--5627
47
4.4
47
94
1
342
47
8
20
23
1.77
5836--5981
35
4.2
35
78
5
161
53
4
23
19
1.62
5832--5986
69
2.2
70
86
5
208
54
4
23
18
1.62
5876--5917
20
2.1
20
86
0
57
52
4
23
19
1.65
6220--6314
21
4.5
22
75
20
78
52
7
17
22
1.69
9025--9058
16
2.2
16
89
5
52
29
2
8
58
1.43
11971--12003
17
2.1
17
88
11
52
66
12
6
15
1.42
15004--15042
20
1.9
21
89
5
62
23
20
0
56
1.42
24275--24350
27
2.8
27
87
0
107
18
19
23
38
1.93

Tables:   1

The End!