Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01016067.1 Corchorus capsularis cultivar CVL-1 contig16088, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8774
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.25


Found at i:1436 original size:3 final size:3

Alignment explanation


    Indices: 1428--1469  Score: 57
    Period size: 3  Copynumber: 13.3  Consensus size: 3

       1418 AAACATATAT

                                                        *          
       1428 ATA ATA ATA ATA ATA ATAA ATA ATA ATA ATA ACTG ATA ATA A
          1 ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA A-TA ATA ATA A

       1470 CAATTTTTGA


Statistics
Matches: 35,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
   3   30  0.86
   4    5  0.14

ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31


Consensus pattern (3 bp):   
ATA

Found at i:1451 original size:13 final size:13

Alignment explanation


    Indices: 1428--1469  Score: 59
    Period size: 13  Copynumber: 3.3  Consensus size: 13

       1418 AAACATATAT

                         
       1428 ATAAT-AATAATA
          1 ATAATAAATAATA

                         
       1440 ATAATAAATAATA
          1 ATAATAAATAATA

                   * *   
       1453 ATAATAACTGATA
          1 ATAATAAATAATA

                
       1466 ATAA
          1 ATAA

       1470 CAATTTTTGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  12    5  0.19
  13   22  0.81

ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31


Consensus pattern (13 bp):   
ATAATAAATAATA
Done.