Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016071.1 Corchorus capsularis cultivar CVL-1 contig16092, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27749

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87--309
35
6.5
34
74
15
133
54
4
20
21
1.61
147--319
36
4.8
37
83
9
148
55
2
20
20
1.56
187--301
7
15.7
7
71
6
50
56
2
21
19
1.54
195--325
36
3.6
36
91
2
199
56
3
22
17
1.57
7989--8036
20
2.4
20
92
0
78
14
29
37
18
1.91
9715--9932
42
5.2
42
84
2
242
46
9
17
26
1.79
9715--9933
84
2.6
84
83
2
271
46
9
17
26
1.79
10161--10356
32
5.7
30
66
28
90
37
8
22
31
1.83
10306--10364
32
2.0
29
83
12
75
40
3
22
33
1.70
9909--10593
71
9.7
70
88
1
843
39
10
22
28
1.87
10924--11137
40
5.3
40
90
1
320
46
10
20
22
1.81
11142--11226
36
2.5
34
83
11
104
42
7
18
31
1.77
13129--13163
5
6.8
5
90
3
52
77
0
20
2
0.90
13122--13158
15
2.6
14
91
8
58
78
0
18
2
0.87
13249--13351
53
2.0
52
84
1
134
16
20
27
35
1.94
15246--15278
16
2.0
17
94
5
59
48
36
15
0
1.45
15301--15344
16
2.8
16
82
0
52
50
27
9
13
1.72
16029--16089
32
1.9
32
83
6
79
34
27
18
19
1.95
16803--16928
16
7.9
16
66
13
62
34
31
19
15
1.92
18933--18962
13
2.2
14
94
5
53
46
0
6
46
1.29
19679--19739
31
2.0
31
93
0
104
42
11
8
37
1.71
24094--24152
30
2.0
30
83
6
75
18
28
16
35
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25994--26052
30
2.0
30
86
6
84
18
28
18
33
1.95

Tables:   1

The End!