genome.fa.s16072.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01016072.1 Corchorus capsularis cultivar CVL-1 contig16093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74208

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001--1059	30	2.0	30	86	6	84	18	28	18	33	1.95
3751--3842	40	2.3	41	81	12	111	52	5	18	23	1.66
3801--4091	71	4.1	71	90	1	451	42	10	22	24	1.84
3801--4125	71	4.6	71	88	1	449	42	10	22	23	1.85
4256--4969	36	19.9	36	90	0	1009	43	8	22	24	1.82
4995--5123	36	3.8	33	76	19	124	44	7	18	28	1.77
4995--5123	68	1.9	68	88	6	199	44	7	18	28	1.77
4995--5102	32	3.3	31	78	19	119	44	7	18	29	1.77
6363--6430	34	2.0	34	91	0	109	26	27	17	27	1.98
7921--8018	22	4.5	22	73	18	89	36	7	14	41	1.73
7891--8276	44	9.0	44	66	15	146	39	9	17	34	1.81
8045--8296	22	11.5	22	73	13	119	39	11	16	33	1.84
11390--11416	13	2.1	13	100	0	54	44	14	0	40	1.46
11530--11571	19	2.3	18	84	8	57	61	0	4	33	1.17
11535--11571	19	2.0	19	89	5	58	64	0	2	32	1.07
29252--29329	27	2.9	27	88	7	106	17	16	24	41	1.90
29995--30028	16	2.1	16	88	0	50	58	11	20	8	1.59
32040--32372	50	6.6	50	81	2	407	43	4	15	36	1.67
32031--32435	101	4.0	100	89	2	589	43	5	15	36	1.69
33105--33436	55	6.3	55	86	7	481	49	7	18	25	1.73
33159--33436	101	2.7	101	89	7	423	48	7	17	25	1.73
33106--33434	156	2.1	156	91	2	527	48	7	18	25	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34085--34204	22	5.5	22	73	10	104	54	3	20	21	1.59
34131--34188	15	4.0	15	71	13	50	58	3	18	18	1.53
34161--34240	36	2.2	35	80	10	90	55	5	21	18	1.62
34298--34416	29	4.3	27	68	22	77	57	2	18	21	1.51
34350--34388	20	2.0	20	84	0	51	53	5	28	12	1.60
36798--37026	71	3.2	69	85	3	296	44	7	22	25	1.80
36943--37120	96	1.9	96	90	2	286	45	8	22	23	1.79
37013--37064	26	2.0	26	84	0	68	48	9	25	17	1.77
37039--37255	71	3.1	69	84	4	290	42	10	21	25	1.84
36872--37193	167	1.9	167	87	2	477	44	8	22	25	1.80
37039--37243	70	2.9	72	86	4	283	42	10	20	26	1.84
36801--37255	238	1.9	238	86	4	659	43	9	21	25	1.82
37380--37485	40	2.9	36	82	10	117	50	12	14	22	1.75
37490--37879	39	9.9	39	95	1	656	46	7	21	23	1.77
37889--38055	32	5.1	32	80	8	201	43	6	22	27	1.78
37872--38055	68	2.8	67	84	6	241	42	5	23	27	1.77
37889--38071	100	1.8	100	91	0	303	44	7	21	27	1.78
40979--41034	22	2.5	22	91	2	94	51	0	33	14	1.42
40978--41037	21	2.7	22	92	7	95	53	0	33	13	1.40
43015--43528	64	7.9	64	75	10	349	26	23	14	35	1.93
43014--43352	134	2.5	134	90	0	498	26	23	15	34	1.94
43301--43528	62	3.7	63	84	7	281	26	24	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43237--43528	62	4.6	62	80	8	279	26	23	14	35	1.93
43026--43528	135	3.9	126	82	5	363	26	23	14	35	1.94
46276--46329	25	2.1	25	83	10	65	37	9	18	35	1.83
46175--47045	434	2.0	433	96	2	1579	38	15	19	26	1.92
47497--47543	17	2.9	16	76	17	51	76	0	19	4	0.95
49645--49689	20	2.2	20	84	4	54	13	11	8	66	1.44
52887--52924	14	2.7	14	87	0	58	55	18	15	10	1.68
52926--53762	35	22.7	35	81	9	655	42	11	18	26	1.84
52926--53757	146	5.6	145	80	8	767	42	11	18	26	1.85
52926--53502	220	2.7	215	83	7	686	41	12	18	27	1.86
52925--53778	74	11.6	74	76	14	397	42	11	18	26	1.85
52963--53778	188	4.4	183	80	11	652	42	11	18	26	1.85
53780--54110	37	9.0	37	89	3	373	46	12	16	24	1.81
53783--54180	37	10.9	35	86	3	213	45	13	16	24	1.83
54008--54161	72	2.2	71	82	4	184	47	12	15	24	1.80
54184--54318	32	4.1	32	86	8	189	36	8	26	28	1.85
54189--54367	32	5.2	36	87	4	176	38	7	22	31	1.83
55162--55307	67	2.1	69	91	2	233	23	28	19	28	1.98
58844--58877	16	2.2	16	89	5	52	58	8	2	29	1.43
60158--60193	19	1.9	18	88	5	54	33	22	2	41	1.68
68664--68697	16	2.2	16	89	5	52	58	8	2	29	1.43
69977--70012	19	1.9	18	88	5	54	33	22	2	41	1.68

Tables:   1

The End!